Gene detail

Detailed information of evm.model.Ap3.2003 in Astrangia poculata

Genomic Location: Ap3:21723498...21723869
NR annotation: CAH3016682.1, unnamed protein product [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35067	Histone H2B OS=Acropora formosa OX=126732 PE=3 SV=1
Q6PC60	Histone H2B 3 OS=Danio rerio OX=7955 GN=hist2h2l PE=2 SV=3
Q9D2U9	H2B.U histone 2 OS=Mus musculus OX=10090 GN=H2bu2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000395 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00125 all species →	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007125 all species →	Domain	Histone H2A/H2B/H3	Interproscan
IPR000558 all species →	Family	Histone H2B	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23428 all species →	HISTONE H2B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11252	H2B; histone H2B	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap3.2003 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

22TPM > 0

4Conditions

1,289.7Max TPM

178.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism · cold control	14	6	145.97	642.92
whole organism · heat control	12	6	193.87	767.77
whole organism · cold challenge	12	7	277.59	1,289.69
whole organism · heat challenge	11	3	96.17	548.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	642.92
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	612.14
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	254.99
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	212.33
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	193.03
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	128.20
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	767.77
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	650.36
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	369.42
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	218.10
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	195.90
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	124.89
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	1,289.69
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	608.56
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	594.08
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	294.57
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	233.08
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	157.94
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	153.15
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	548.18
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	255.22
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	254.42
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.