Detailed information of evm.model.Ap3.2004 in Astrangia poculata

Genomic Location: Ap3:21725968...21726339
NR annotation: CAH3016682.1, unnamed protein product [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P35067Histone H2B OS=Acropora formosa OX=126732 PE=3 SV=1
Q6PC60Histone H2B 3 OS=Danio rerio OX=7955 GN=hist2h2l PE=2 SV=3
Q9D2U9H2B.U histone 2 OS=Mus musculus OX=10090 GN=H2bu2 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000395 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00125
all species →		HistoneCore histone H2A/H2B/H3/H4DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007125
all species →		DomainHistone H2A/H2B/H3Interproscan
IPR000558
all species →		FamilyHistone H2BInterproscan
IPR009072
all species →		Homologous_superfamilyHistone-foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23428
all species →		HISTONE H2BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000786
all species →		Cellular ComponentnucleosomeInterproscan
GO:0030527
all species →		Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982
all species →		Molecular Functionprotein heterodimerization activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11252H2B; histone H2B-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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