Gene detail

Detailed information of evm.model.Ap3.2022_evm.model.Ap3.2023 in Astrangia poculata

Genomic Location: Ap3:21947912...21975367
NR annotation: KAJ7374972.1, hypothetical protein OS493_001697 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.2022_evm.model.Ap3.2023

atgcttttagtagcaagtttcagttcagtttacagcaagaagttcgtgaacgttgtgaagcaaaacacagggcgaactgagtatgtcaggtggttttcagtcactggacaagactggccacagttttgcttgaattgcccagcagatctgaagggatcgtcatgcgaaagattgcgtgacatgtccaaagagcatctgcgagggaagtttctgagaattagttaccctgccgtgcagtatgtgattagttttagttcattaccaatggatgtgcttacacagagacttgttcctaaaattgttcttttcatactgctcctatcttttgctacagttaccaactctcaagttgatgggtgtaaaaattacacagtcctcagtgaagcagaccgcgctcaagtaaacgaagtgaggaacagcttgtgcgatagggacctggttgcgggttggtaccggttccaaggagctgccggggatcggatggcgcacaaatgtgttcccgagtatcgctgcggtactgaagatccgggctggcttaatggtgcacacccgacagtcgctgaaggtgcggtgactcgtaaagtctgttatcactcggcaggccgctgctgtcgctataataacaacataaaagtgaagaactgtagcggttattacgtgtatgagttacaaaagccgcctaactgcaaagctcgatactgtggtaacgccggtgctgtatgtccaaagaactggatttacatgcaaggttcctactaccatttctcttgcggcgcctccttgaattgggctgcagccaaatccgcctgtgaagcattgggatccaaccttgtcgtgataaattcacaagcagaacaacaagcaattgccgcaaaagtatctcagggcacatggattggtttgtacagagatcctaaagacaagtctcgctggctgtgggttgatgaaacaccagtcacttacactaactgggctgaaggagaacctaatagtcctaacagcgagaagtgtggtgtaatgtctcctaagcgcggatggaaatggaatgacaagcaatgttttactaagtttcctttcgtgtgtgaaaagagagatgaacagcgtgtaactttgagtgcatcccatttgctggtgaacgtgagcggcaaatttgtcattaactgtactgtttttaatggaccgaacgacctcatcatcacgtggtttaaagcaggcaaagtgattggtctgagtcaccgcacaaaagtcgaaactggactacgtcattcgcgcttgactgttagagatgtcatggcggaagaccaaggaaactatacctgtcaagcaatcaaaggaaaacagatggacaaagcagacatatttattggagtaaaccctatacttgaaattaaacctcgaaccgtcaccaagcgcgtgggtggcaatgtaacgtttacctgtggtgtggtcagtggcttcaggaaaggagcaagcgtacttataatagaagtgacgaataaagacaatgaagtacgccatcaggaaatgaacttcacagcaacaaatctgcaaatacctgagggaggggagagtcacgtgaggaaatttgtctgtgagatgacgactcaacaaaatgtcttgtcaaggagcgacgtggcagagttggtcattatcaaaccagaggcacccaagtgtccggaggagctgctagagggcgttctctggtcagatacggctgcggaaagaacggatataaaaccgtgtccgaatggagccagcggaaccgcttcacgtaattgttctggggatgtaacgtggaaatacgccaactttgtaggttgtagctcagctgaatttctcaggttaggtgacgagatcgaagcaattacggaaggttttcagtcaaacaccgtccaacaagtcctatcagagcttgtgaacgtcactcagccagtgccgaaaaacgataccaaaagaccaccagagatcttcggaggggacttggttatagctgtgaagatactagttacattggccgactttaatgctaaacaaggcaacgtgagtacagaggaagatacgaacaatttcgctcaagtggccagtaatttgttggaatcaacaaaccgtataacttggcaacaactcgagaaattaaatcagagtcaaggtcaaagtttggtcaaagcaatggatgattatggtctgggagccgccgccacattcactggatcgacagactcaagagttgttcaaacaaagaacctggcgatgagactcgatcgagcaaataacaacagtctgttgagagataaaggcttgactgtcacgtacaatcaaagttccatccagctgcctcctgaagctttcagatcatctccagattcccgtgtcgtaaccttggtgtatctcacgttcaacgatgttttaccgctcagacaagaaagcaatgacgatgacaatgagcatgcgctatccgccaataccactatcgtctcgtccactatcgatcccaggcctccagccgttttgaagaaaccagtcaagatcgttcttcagaacagaagggtgaatgatccagctggagttacaccacaagcaaagtgcgttttctggcggcccggagaagccgcgatatggcagaccagcggatgtaggttaatacccagcgaatctgacgtcaacaaaacaacatgtgaatgtgaccacctgaccatctttgcctcattaatggatccatacgacgcatctattggtgaagctcacacaaaagctctggaaatcatttcaatagtcggctgttccatatctctcctcgccgttctcattactatagctgttactctgttcttctggagagcggtaaaaagcccaagatcaaaagttctgctgaacctgtgtgctgccgtggctgtttcctgtattcttgttatatttgaaggatcagcgagagataacaaggtgggctgtactatactagcggctttactacactacttcttgttggcgctgttttgttggatgctgtgcgagggcgtgttacactacttgctaatcgtgaaagtgttcggtggtgaagctgcggacaaagtcaagtacttctacatatttggatggggtttcccaatcatcgttgtcagcatttctttaggtgtcactcaagcggatgggtacggttcgtcagaagcttgctggcttgatgtctctagtggacttatctggggattcattgcaccagcagtagtcattatcttggtaaatatcgtggtgtttatcctggtgattcgtcaaatgatgggaacaagatatgtccagaataagacgcaaatcgagaaagttaaagctggagtcaaggcctccgcggtcattcttcccttgcttggaatcacgtggttgtttggacttctgagcttcagctcatctatgatcgccttcaaatacatattcgccattgctaattcactacagggagtaatgatattcatctttcattgcttgctgaataagcagataaaggacgccattaaacgaaggcaagaaaaaagtagtacagctgatgtattgacgaatccgagaaccaaaccctctcctattctgaacgttaaacacgctactaatctgccaggcaaagccaacaagaagcgaacaaaacggtcgaaaaaagattatgaaatggtggacagcattacgaatgaaaaggaagtgtccacattgccaccagttcgcaaaactgcaaagaacgtacagccaagaaagttacaagagtccgtaaaaaatgatgaagacttcgatatcataatgaaacaaagacgaaataaggttgaaaacatccaaagagcgaccgatgcataa

Transcript

evm.model.Ap3.2022_evm.model.Ap3.2023

ATGCTTTTAGTAGCAAGTTTCAGTTCAGTTTACAGCAAGAAGTTCGTGAACGTTGTGAAGCAAAACACAGGGCGAACTGAGTATGTCAGGTGGTTTTCAGTCACTGGACAAGACTGGCCACAGTTTTGCTTGAATTGCCCAGCAGATCTGAAGGGATCGTCATGCGAAAGATTGCGTGACATGTCCAAAGAGCATCTGCGAGGGAAGTTTCTGAGAATTAGTTACCCTGCCGTGCAGTATGTGATTAGTTTTAGTTCATTACCAATGGATGTGCTTACACAGAGACTTGTTCCTAAAATTGTTCTTTTCATACTGCTCCTATCTTTTGCTACAGTTACCAACTCTCAAGTTGATGGGTGTAAAAATTACACAGTCCTCAGTGAAGCAGACCGCGCTCAAGTAAACGAAGTGAGGAACAGCTTGTGCGATAGGGACCTGGTTGCGGGTTGGTACCGGTTCCAAGGAGCTGCCGGGGATCGGATGGCGCACAAATGTGTTCCCGAGTATCGCTGCGGTACTGAAGATCCGGGCTGGCTTAATGGTGCACACCCGACAGTCGCTGAAGGTGCGGTGACTCGTAAAGTCTGTTATCACTCGGCAGGCCGCTGCTGTCGCTATAATAACAACATAAAAGTGAAGAACTGTAGCGGTTATTACGTGTATGAGTTACAAAAGCCGCCTAACTGCAAAGCTCGATACTGTGGTAACGCCGGTGCTGTATGTCCAAAGAACTGGATTTACATGCAAGGTTCCTACTACCATTTCTCTTGCGGCGCCTCCTTGAATTGGGCTGCAGCCAAATCCGCCTGTGAAGCATTGGGATCCAACCTTGTCGTGATAAATTCACAAGCAGAACAACAAGCAATTGCCGCAAAAGTATCTCAGGGCACATGGATTGGTTTGTACAGAGATCCTAAAGACAAGTCTCGCTGGCTGTGGGTTGATGAAACACCAGTCACTTACACTAACTGGGCTGAAGGAGAACCTAATAGTCCTAACAGCGAGAAGTGTGGTGTAATGTCTCCTAAGCGCGGATGGAAATGGAATGACAAGCAATGTTTTACTAAGTTTCCTTTCGTGTGTGAAAAGAGAGATGAACAGCGTGTAACTTTGAGTGCATCCCATTTGCTGGTGAACGTGAGCGGCAAATTTGTCATTAACTGTACTGTTTTTAATGGACCGAACGACCTCATCATCACGTGGTTTAAAGCAGGCAAAGTGATTGGTCTGAGTCACCGCACAAAAGTCGAAACTGGACTACGTCATTCGCGCTTGACTGTTAGAGATGTCATGGCGGAAGACCAAGGAAACTATACCTGTCAAGCAATCAAAGGAAAACAGATGGACAAAGCAGACATATTTATTGGAGTAAACCCTATACTTGAAATTAAACCTCGAACCGTCACCAAGCGCGTGGGTGGCAATGTAACGTTTACCTGTGGTGTGGTCAGTGGCTTCAGGAAAGGAGCAAGCGTACTTATAATAGAAGTGACGAATAAAGACAATGAAGTACGCCATCAGGAAATGAACTTCACAGCAACAAATCTGCAAATACCTGAGGGAGGGGAGAGTCACGTGAGGAAATTTGTCTGTGAGATGACGACTCAACAAAATGTCTTGTCAAGGAGCGACGTGGCAGAGTTGGTCATTATCAAACCAGAGGCACCCAAGTGTCCGGAGGAGCTGCTAGAGGGCGTTCTCTGGTCAGATACGGCTGCGGAAAGAACGGATATAAAACCGTGTCCGAATGGAGCCAGCGGAACCGCTTCACGTAATTGTTCTGGGGATGTAACGTGGAAATACGCCAACTTTGTAGGTTGTAGCTCAGCTGAATTTCTCAGGTTAGGTGACGAGATCGAAGCAATTACGGAAGGTTTTCAGTCAAACACCGTCCAACAAGTCCTATCAGAGCTTGTGAACGTCACTCAGCCAGTGCCGAAAAACGATACCAAAAGACCACCAGAGATCTTCGGAGGGGACTTGGTTATAGCTGTGAAGATACTAGTTACATTGGCCGACTTTAATGCTAAACAAGGCAACGTGAGTACAGAGGAAGATACGAACAATTTCGCTCAAGTGGCCAGTAATTTGTTGGAATCAACAAACCGTATAACTTGGCAACAACTCGAGAAATTAAATCAGAGTCAAGGTCAAAGTTTGGTCAAAGCAATGGATGATTATGGTCTGGGAGCCGCCGCCACATTCACTGGATCGACAGACTCAAGAGTTGTTCAAACAAAGAACCTGGCGATGAGACTCGATCGAGCAAATAACAACAGTCTGTTGAGAGATAAAGGCTTGACTGTCACGTACAATCAAAGTTCCATCCAGCTGCCTCCTGAAGCTTTCAGATCATCTCCAGATTCCCGTGTCGTAACCTTGGTGTATCTCACGTTCAACGATGTTTTACCGCTCAGACAAGAAAGCAATGACGATGACAATGAGCATGCGCTATCCGCCAATACCACTATCGTCTCGTCCACTATCGATCCCAGGCCTCCAGCCGTTTTGAAGAAACCAGTCAAGATCGTTCTTCAGAACAGAAGGGTGAATGATCCAGCTGGAGTTACACCACAAGCAAAGTGCGTTTTCTGGCGGCCCGGAGAAGCCGCGATATGGCAGACCAGCGGATGTAGGTTAATACCCAGCGAATCTGACGTCAACAAAACAACATGTGAATGTGACCACCTGACCATCTTTGCCTCATTAATGGATCCATACGACGCATCTATTGGTGAAGCTCACACAAAAGCTCTGGAAATCATTTCAATAGTCGGCTGTTCCATATCTCTCCTCGCCGTTCTCATTACTATAGCTGTTACTCTGTTCTTCTGGAGAGCGGTAAAAAGCCCAAGATCAAAAGTTCTGCTGAACCTGTGTGCTGCCGTGGCTGTTTCCTGTATTCTTGTTATATTTGAAGGATCAGCGAGAGATAACAAGGTGGGCTGTACTATACTAGCGGCTTTACTACACTACTTCTTGTTGGCGCTGTTTTGTTGGATGCTGTGCGAGGGCGTGTTACACTACTTGCTAATCGTGAAAGTGTTCGGTGGTGAAGCTGCGGACAAAGTCAAGTACTTCTACATATTTGGATGGGGTTTCCCAATCATCGTTGTCAGCATTTCTTTAGGTGTCACTCAAGCGGATGGGTACGGTTCGTCAGAAGCTTGCTGGCTTGATGTCTCTAGTGGACTTATCTGGGGATTCATTGCACCAGCAGTAGTCATTATCTTGGTAAATATCGTGGTGTTTATCCTGGTGATTCGTCAAATGATGGGAACAAGATATGTCCAGAATAAGACGCAAATCGAGAAAGTTAAAGCTGGAGTCAAGGCCTCCGCGGTCATTCTTCCCTTGCTTGGAATCACGTGGTTGTTTGGACTTCTGAGCTTCAGCTCATCTATGATCGCCTTCAAATACATATTCGCCATTGCTAATTCACTACAGGGAGTAATGATATTCATCTTTCATTGCTTGCTGAATAAGCAGATAAAGGACGCCATTAAACGAAGGCAAGAAAAAAGTAGTACAGCTGATGTATTGACGAATCCGAGAACCAAACCCTCTCCTATTCTGAACGTTAAACACGCTACTAATCTGCCAGGCAAAGCCAACAAGAAGCGAACAAAACGGTCGAAAAAAGATTATGAAATGGTGGACAGCATTACGAATGAAAAGGAAGTGTCCACATTGCCACCAGTTCGCAAAACTGCAAAGAACGTACAGCCAAGAAAGTTACAAGAGTCCGTAAAAAATGATGAAGACTTCGATATCATAATGAAACAAAGACGAAATAAGGTTGAAAACATCCAAAGAGCGACCGATGCATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14514	Adhesion G protein-coupled receptor B1 OS=Homo sapiens OX=9606 GN=ADGRB1 PE=1 SV=2
C0HL12	Adhesion G protein-coupled receptor B1 OS=Rattus norvegicus OX=10116 GN=Adgrb1 PE=1 SV=1
Q3UHD1	Adhesion G protein-coupled receptor B1 OS=Mus musculus OX=10090 GN=Adgrb1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000438 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF16489 all species →	GAIN	GPCR-Autoproteolysis INducing (GAIN) domain	Domain	Interproscan
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR001879 all species →	Domain	GPCR, family 2, extracellular hormone receptor domain	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR017983 all species →	Conserved_site	GPCR, family 2, secretin-like, conserved site	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR032471 all species →	Domain	GAIN domain, N-terminal	Interproscan
IPR008077 all species →	Family	GPCR, family 2, brain-specific angiogenesis inhibitor	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan
IPR036445 all species →	Homologous_superfamily	GPCR family 2, extracellular hormone receptor domain superfamily	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR033989 all species →	Domain	CD209-like, C-type lectin-like domain	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12011 all species →	ADHESION G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016525 all species →	Biological Process	negative regulation of angiogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.2022_evm.model.Ap3.2023.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.