Gene detail

Detailed information of evm.model.Ap3.2038 in Astrangia poculata

Genomic Location: Ap3:22111187...22128918
NR annotation: XP_020630694.1, trafficking protein particle complex subunit 12-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.2038

atgggtcagggaagttccaaagagcgctacaaaagtgctgtaaagaaactcagcagcatagaattggcaaatatcgaagcagtgttcaatgagatttcgacgaaaagagaggatggcacacgacatgttgaactgtctctgattaatcgtcgagattttgctgaacgattccgacttccaggctttattggtgaacgtctttttcatgctttcgacaaagatgagaatggtactattgacctggaagagtttattggaggaatagctctgtgtttgcatggaacagttaaagataaatgcagattgttattccatatcttcaatttggccgaggatgatggtgttagtagagatgaactgactgcagttcttttaagctcacttgagtcagctcagaccatactggataatgtggaggacgtagagcaacctgaatttgaggggactggaacagacaagctgattgacactgtaacaaggattgtcagtgatgcatttgagacaagtaaggtgtctaagactggaaagctttctgctaaggagtttgaaaattggctttatcgaaaccctcaaattatggataacgtttttggctggcagtgtcctagccctgaagagggtcaatggatgaatgatagctcaccagaaccaagtcccactaaaacaaagtacaccagtaagacagacgaatctgttcagagtgttgaaattcaaggtgtaccagctgaacgtagtgacaatcgcaccctaagtgacttgttttcaacaaattctagttcagctcatgacgaagaaggacacagtttctttgattctcttgtcgcacctggaacaacagaccccttttctcaagtttctgaacaaacctttctgacatcaaatgagccttcagagctgtctcagcaactttcagaagtacagtcagtgcacgaaccttcccagccaccattggagcctctgacgcttaataaccaggaagcattgcaagacgaatcacagcaatggccatcattccaaggagctgacaactccatgccaccacttgccccaattccattgcagacctctcaaggttttaacgacccattaaatgctgcacagaaccaagtttcctctaataccaaactgaatattactcaggaaccaagacagccatctgcaccaccaactcctgagggggagtgggtgaggagcaaacagactgaagccgagaggaggaactcggcatggatatcgacacctcaaacgaatcagtttcttgtcaccattggatcaggaatgttgaatccatctgatgtcgatcaacagttcttaacatcccctggactggttattgagggaccacaggtagatccagtaaaggaactcttgttaaagtttatgggtgaacaagaagcagagaatagaaagacattgagtgttgatagtgttccacttgatgagtcaggactcagagaattactggcttcacagtgttggagagctgctctggaatttaccaccaggttcctaacagcacatggtcagggagtgggacagaagggtcagagagctttacatactcacaagaccctacaggtttggttttgccgtatagctctcttgttcaaactacagatgtttagcacagctgaggttgagttggaagcatttggaagttttaaccaacctgacttgttttatgagttctaccctgatacatatcctggcaggaaaggatccatggtaccattttctttaaggatcctacaagcagaactgcctcagtatatgggcagacccaaagatgccttggacaacctgtatgagctccagaggacctgctgcaaggtgctgaaaaacctgcaggacaatctgactgaggatggaggccagggggaaattacacctgaaaacagactggccgccatagagttatggatctccagagaggtgcgagttctttattcaataggaaactgttttcttggaatgaaggattacagtttagctgtggcagtttttgaatcaatcatggatagagatccctcctctaccttcagcttattatccgggattggaagaatctacttacagcttggagacttggaaatggcacaaaactatttcaagcgggtggagtccaaagccactggcgatccaaagtcacttagcagcgtggtcatgaataagggcttgttggctctgtctgcggggtcgtttgacgaagctcataggcattttgtagctgctacaaaactagacccttataattctgtggctgtaaataacgtggctgtttgtttattgttccttggaaaactcaaagaggcgcttgcattgttggagaggattatctggaaagatcctaaaacaaaccttcaagaaggactgctctttaacttgtgcacgatttacgaactagaatcatcttacagctcacaaaagaagcaaaagcttctagaactggtcggcaagcatcgaggcgacggttttaatatttcatgtctcaaaatagcgtga

Transcript

evm.model.Ap3.2038

ATGGGTCAGGGAAGTTCCAAAGAGCGCTACAAAAGTGCTGTAAAGAAACTCAGCAGCATAGAATTGGCAAATATCGAAGCAGTGTTCAATGAGATTTCGACGAAAAGAGAGGATGGCACACGACATGTTGAACTGTCTCTGATTAATCGTCGAGATTTTGCTGAACGATTCCGACTTCCAGGCTTTATTGGTGAACGTCTTTTTCATGCTTTCGACAAAGATGAGAATGGTACTATTGACCTGGAAGAGTTTATTGGAGGAATAGCTCTGTGTTTGCATGGAACAGTTAAAGATAAATGCAGATTGTTATTCCATATCTTCAATTTGGCCGAGGATGATGGTGTTAGTAGAGATGAACTGACTGCAGTTCTTTTAAGCTCACTTGAGTCAGCTCAGACCATACTGGATAATGTGGAGGACGTAGAGCAACCTGAATTTGAGGGGACTGGAACAGACAAGCTGATTGACACTGTAACAAGGATTGTCAGTGATGCATTTGAGACAAGTAAGGTGTCTAAGACTGGAAAGCTTTCTGCTAAGGAGTTTGAAAATTGGCTTTATCGAAACCCTCAAATTATGGATAACGTTTTTGGCTGGCAGTGTCCTAGCCCTGAAGAGGGTCAATGGATGAATGATAGCTCACCAGAACCAAGTCCCACTAAAACAAAGTACACCAGTAAGACAGACGAATCTGTTCAGAGTGTTGAAATTCAAGGTGTACCAGCTGAACGTAGTGACAATCGCACCCTAAGTGACTTGTTTTCAACAAATTCTAGTTCAGCTCATGACGAAGAAGGACACAGTTTCTTTGATTCTCTTGTCGCACCTGGAACAACAGACCCCTTTTCTCAAGTTTCTGAACAAACCTTTCTGACATCAAATGAGCCTTCAGAGCTGTCTCAGCAACTTTCAGAAGTACAGTCAGTGCACGAACCTTCCCAGCCACCATTGGAGCCTCTGACGCTTAATAACCAGGAAGCATTGCAAGACGAATCACAGCAATGGCCATCATTCCAAGGAGCTGACAACTCCATGCCACCACTTGCCCCAATTCCATTGCAGACCTCTCAAGGTTTTAACGACCCATTAAATGCTGCACAGAACCAAGTTTCCTCTAATACCAAACTGAATATTACTCAGGAACCAAGACAGCCATCTGCACCACCAACTCCTGAGGGGGAGTGGGTGAGGAGCAAACAGACTGAAGCCGAGAGGAGGAACTCGGCATGGATATCGACACCTCAAACGAATCAGTTTCTTGTCACCATTGGATCAGGAATGTTGAATCCATCTGATGTCGATCAACAGTTCTTAACATCCCCTGGACTGGTTATTGAGGGACCACAGGTAGATCCAGTAAAGGAACTCTTGTTAAAGTTTATGGGTGAACAAGAAGCAGAGAATAGAAAGACATTGAGTGTTGATAGTGTTCCACTTGATGAGTCAGGACTCAGAGAATTACTGGCTTCACAGTGTTGGAGAGCTGCTCTGGAATTTACCACCAGGTTCCTAACAGCACATGGTCAGGGAGTGGGACAGAAGGGTCAGAGAGCTTTACATACTCACAAGACCCTACAGGTTTGGTTTTGCCGTATAGCTCTCTTGTTCAAACTACAGATGTTTAGCACAGCTGAGGTTGAGTTGGAAGCATTTGGAAGTTTTAACCAACCTGACTTGTTTTATGAGTTCTACCCTGATACATATCCTGGCAGGAAAGGATCCATGGTACCATTTTCTTTAAGGATCCTACAAGCAGAACTGCCTCAGTATATGGGCAGACCCAAAGATGCCTTGGACAACCTGTATGAGCTCCAGAGGACCTGCTGCAAGGTGCTGAAAAACCTGCAGGACAATCTGACTGAGGATGGAGGCCAGGGGGAAATTACACCTGAAAACAGACTGGCCGCCATAGAGTTATGGATCTCCAGAGAGGTGCGAGTTCTTTATTCAATAGGAAACTGTTTTCTTGGAATGAAGGATTACAGTTTAGCTGTGGCAGTTTTTGAATCAATCATGGATAGAGATCCCTCCTCTACCTTCAGCTTATTATCCGGGATTGGAAGAATCTACTTACAGCTTGGAGACTTGGAAATGGCACAAAACTATTTCAAGCGGGTGGAGTCCAAAGCCACTGGCGATCCAAAGTCACTTAGCAGCGTGGTCATGAATAAGGGCTTGTTGGCTCTGTCTGCGGGGTCGTTTGACGAAGCTCATAGGCATTTTGTAGCTGCTACAAAACTAGACCCTTATAATTCTGTGGCTGTAAATAACGTGGCTGTTTGTTTATTGTTCCTTGGAAAACTCAAAGAGGCGCTTGCATTGTTGGAGAGGATTATCTGGAAAGATCCTAAAACAAACCTTCAAGAAGGACTGCTCTTTAACTTGTGCACGATTTACGAACTAGAATCATCTTACAGCTCACAAAAGAAGCAAAAGCTTCTAGAACTGGTCGGCAAGCATCGAGGCGACGGTTTTAATATTTCATGTCTCAAAATAGCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WVT3	Trafficking protein particle complex subunit 12 OS=Homo sapiens OX=9606 GN=TRAPPC12 PE=1 SV=3
Q8K2L8	Trafficking protein particle complex subunit 12 OS=Mus musculus OX=10090 GN=Trappc12 PE=1 SV=2
Q9Y2W7	Calsenilin OS=Homo sapiens OX=9606 GN=KCNIP3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006095 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13174 all species →	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21581 all species →	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0030008 all species →	Cellular Component	TRAPP complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20309	TRAPPC12; trafficking protein particle complex subunit 12	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.