Gene detail

Detailed information of evm.model.Ap3.2039 in Astrangia poculata

Genomic Location: Ap3:22140423...22166382
NR annotation: XP_027054418.1, rho-associated protein kinase 2-like isoform X1 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.2039

gtgatactccattttatgctgactcactggtaggaacttatggaaaaattatggatcataaaaattcactgcagtttcctgatgacaatgagatatcgatatcgaaggatgccaagcacttaatttgtagttttctaacagacaggacacaaagaattggtcaaagaggaatcgcggaaattcagaagcataaattttttgtcaatgaccagtgggactggaactccatcagagatgctgttcctcctgtggtcccggagctttctagtgacgatgattactcgcactttgatgacattccagaacccgatagtggagaagagttctttcctactccaaaagcttttgctggaaatcatctaccttttataggatttactttttcagaggaagtcgaatggagtgtttcacctagtggcggaggttctgatggaatggtgaggatggatggaaataattccaatgctggaagtgatagtcgtcaaaagcttgaagcaactaaccacagactgagagaattagaagaacaagttgcacttgaaatgcaagccaaagatgaggtggaacacaattacagaatggtgagcaccaagctggaaaaagtcatgaaagaattggacaatgagtcggaggcaaaaagaagagtagaatcatcaaacagagaacttgagagaaatgcagcattgtttaaacatgatttaaaagaggcacagaggcggtgtgagtttgaagctgaagccaagagaaagcttgagagcaaagtacaggaactacagagccgccttgatgcagaacttgatgctcgggacagaatctcgcagtcgtcccagagtgtccagaccaagataactcagttggagaagcaggtctgggagttgaccgaacagctcagagtggaatcggatgcacatgcaaagaataaaaaatcatatagcgatttacaaaagtcatacacagtaatggagagaacgtatggcgatttgcaagacaagaataggatcattagtgatcagaagcttggcttagagagagaacttatcaaggtgcagggaaaccttgaggctgaaatgaacatgagaaatcaagcaaacagtgctaaaactgatatggaatgtcagaacagagtcttaaaagacgagcttgaacagttaaaagcaagagctgcatcagacgccagattacagcaaaaacttcaacaggatcttatcaacctagaaaaagcaaaggctaacactgagtatgaactaaagtcagtccagaataaatttgaaaaagtcacattagagttcaagcaacaacttaccagttaccaaacagaaaagaatagattatcactgaccctggaagaaagaacagaacaggaacgagctgaacaaagcaaaacattggaaagactagaacaagaactggaaatcagaacaaaagctgaggcagcagctgccgaggctgagagagaaagatcagttttagctgtggatcttaaagatttgcaacagaaactggagagactacaacaagaatataatgcccttcaagacaagaataaaagtttgaataacaagttggactctgagagccaaagaagaaatcaactggaaagtgacttgaaactgaatgcccaagaaatagctgcactgcgatcaacagagaaacaacttgcaaagcatgttgaagatctgatggaagaaaagaagcaattggaagatgcatgcacaaaactcaaaagtgcaagtgctgtggatgacctacaaatgaaagagcttcaggaccaactggaggcagaaacatacttttcgactctgtacaaaacccaagtgaaagaactgagagaggaagttgacgaaaaggcaaaacatctgcaagagatgagtaacgagatacgtcagcttagtgaagagagggagtctctctctgcccagctggagttgacattgactatggttgactcggaacagctggcaaggtccattgctgaggaacaattctctgatcttgagaaagaaaagaccatgatcgagctggaggtcaaagaactcattgcaagacataaaagtgacatggtggaaaaaggtgcacagatcagtcagcttgaagaacttaaccagcaactgacagacaacttggaccagaaaatgtccgaaaaagatgaactaaattctaagattaagggtttacaagaagaacttggaaaatccaaggacaacagcaaagacattgaagatgccacagaaagtttgaagaagcagctggtcatcgagaaaacgttaaaaatccaagctgtaaacaaactggcggagataatggccagaaaagacttcgtgctgttgcagagggagaacagcagtaaaaagagaaaggctacgtctgatgaccttaggaagaaggagaaagagtgcagaaagttgcatcaagaactaggagctgaacgagagaagtatggccagatggtgactaaatttcaaggaaatattgctgaataccagcagaatctacaaatggagatggagcagagacagaaaatgcagatggagctggattctaaagaccttatgatcgaccggctgaactctcagattaaacaacgggcgctcaatacgagcattaccgaaaatgatgatctctcggtttcagcccttttacccaaggaaggctgggtatcgataccaaacaaacagaacataaaaagatatggttggaagagacaatatttagtcgttagcagtcgcaagatattcttttataactccgacgctgatcacaaaagtagttcaactcctgccatcattctagaaataagtaagttgtatcacgtgagatctgtaacgcaaggcgatgtcatacgtgccgatgctaaagacattcctaggatatttcagattttatacgccaacgaggctgaaagcattaatccagtggaaaaagacaaagaggagcaacagacagaggaccgaatgaacgcgatcgactacatgaggcatcaatttattcccatgcactatcacatgcctaccaactgtgactcgtgtaacaaacccttgtggcacatgttcaaacctcctccagcggtcgagtgcaaacgttgtcatatgaagtgtcataaggaccatgtcgacagagaagaagcttgtatcacaatgtgtaacgtaaatatggaaatgatctcagccaaagagctcttggtcctcgcgcaaaccgctgacgaacagaagcagtgggtgttgtacttgagtaagaaaatcatccgaaaagaacccaaaataaagagcgcgtctgtaagacttggaagtgaagaagccaatatgagaagaaacgaaacaggaagattacgtgactcgaaccatagcccggccgttctagccttatctagtgaacttgacagtgcagtaaaaaatagtaatggaatcagtgtatacagtaaaacagaacattacagtaataataacgagcggtcacggcacaaacaggcctgcgtttcctcgcttgtcttgcgagtgaaactagtggtgttcctgtgcgactcaagcagtcctgaggagcaaatagcctga

Transcript

evm.model.Ap3.2039

GTGATACTCCATTTTATGCTGACTCACTGGTAGGAACTTATGGAAAAATTATGGATCATAAAAATTCACTGCAGTTTCCTGATGACAATGAGATATCGATATCGAAGGATGCCAAGCACTTAATTTGTAGTTTTCTAACAGACAGGACACAAAGAATTGGTCAAAGAGGAATCGCGGAAATTCAGAAGCATAAATTTTTTGTCAATGACCAGTGGGACTGGAACTCCATCAGAGATGCTGTTCCTCCTGTGGTCCCGGAGCTTTCTAGTGACGATGATTACTCGCACTTTGATGACATTCCAGAACCCGATAGTGGAGAAGAGTTCTTTCCTACTCCAAAAGCTTTTGCTGGAAATCATCTACCTTTTATAGGATTTACTTTTTCAGAGGAAGTCGAATGGAGTGTTTCACCTAGTGGCGGAGGTTCTGATGGAATGGTGAGGATGGATGGAAATAATTCCAATGCTGGAAGTGATAGTCGTCAAAAGCTTGAAGCAACTAACCACAGACTGAGAGAATTAGAAGAACAAGTTGCACTTGAAATGCAAGCCAAAGATGAGGTGGAACACAATTACAGAATGGTGAGCACCAAGCTGGAAAAAGTCATGAAAGAATTGGACAATGAGTCGGAGGCAAAAAGAAGAGTAGAATCATCAAACAGAGAACTTGAGAGAAATGCAGCATTGTTTAAACATGATTTAAAAGAGGCACAGAGGCGGTGTGAGTTTGAAGCTGAAGCCAAGAGAAAGCTTGAGAGCAAAGTACAGGAACTACAGAGCCGCCTTGATGCAGAACTTGATGCTCGGGACAGAATCTCGCAGTCGTCCCAGAGTGTCCAGACCAAGATAACTCAGTTGGAGAAGCAGGTCTGGGAGTTGACCGAACAGCTCAGAGTGGAATCGGATGCACATGCAAAGAATAAAAAATCATATAGCGATTTACAAAAGTCATACACAGTAATGGAGAGAACGTATGGCGATTTGCAAGACAAGAATAGGATCATTAGTGATCAGAAGCTTGGCTTAGAGAGAGAACTTATCAAGGTGCAGGGAAACCTTGAGGCTGAAATGAACATGAGAAATCAAGCAAACAGTGCTAAAACTGATATGGAATGTCAGAACAGAGTCTTAAAAGACGAGCTTGAACAGTTAAAAGCAAGAGCTGCATCAGACGCCAGATTACAGCAAAAACTTCAACAGGATCTTATCAACCTAGAAAAAGCAAAGGCTAACACTGAGTATGAACTAAAGTCAGTCCAGAATAAATTTGAAAAAGTCACATTAGAGTTCAAGCAACAACTTACCAGTTACCAAACAGAAAAGAATAGATTATCACTGACCCTGGAAGAAAGAACAGAACAGGAACGAGCTGAACAAAGCAAAACATTGGAAAGACTAGAACAAGAACTGGAAATCAGAACAAAAGCTGAGGCAGCAGCTGCCGAGGCTGAGAGAGAAAGATCAGTTTTAGCTGTGGATCTTAAAGATTTGCAACAGAAACTGGAGAGACTACAACAAGAATATAATGCCCTTCAAGACAAGAATAAAAGTTTGAATAACAAGTTGGACTCTGAGAGCCAAAGAAGAAATCAACTGGAAAGTGACTTGAAACTGAATGCCCAAGAAATAGCTGCACTGCGATCAACAGAGAAACAACTTGCAAAGCATGTTGAAGATCTGATGGAAGAAAAGAAGCAATTGGAAGATGCATGCACAAAACTCAAAAGTGCAAGTGCTGTGGATGACCTACAAATGAAAGAGCTTCAGGACCAACTGGAGGCAGAAACATACTTTTCGACTCTGTACAAAACCCAAGTGAAAGAACTGAGAGAGGAAGTTGACGAAAAGGCAAAACATCTGCAAGAGATGAGTAACGAGATACGTCAGCTTAGTGAAGAGAGGGAGTCTCTCTCTGCCCAGCTGGAGTTGACATTGACTATGGTTGACTCGGAACAGCTGGCAAGGTCCATTGCTGAGGAACAATTCTCTGATCTTGAGAAAGAAAAGACCATGATCGAGCTGGAGGTCAAAGAACTCATTGCAAGACATAAAAGTGACATGGTGGAAAAAGGTGCACAGATCAGTCAGCTTGAAGAACTTAACCAGCAACTGACAGACAACTTGGACCAGAAAATGTCCGAAAAAGATGAACTAAATTCTAAGATTAAGGGTTTACAAGAAGAACTTGGAAAATCCAAGGACAACAGCAAAGACATTGAAGATGCCACAGAAAGTTTGAAGAAGCAGCTGGTCATCGAGAAAACGTTAAAAATCCAAGCTGTAAACAAACTGGCGGAGATAATGGCCAGAAAAGACTTCGTGCTGTTGCAGAGGGAGAACAGCAGTAAAAAGAGAAAGGCTACGTCTGATGACCTTAGGAAGAAGGAGAAAGAGTGCAGAAAGTTGCATCAAGAACTAGGAGCTGAACGAGAGAAGTATGGCCAGATGGTGACTAAATTTCAAGGAAATATTGCTGAATACCAGCAGAATCTACAAATGGAGATGGAGCAGAGACAGAAAATGCAGATGGAGCTGGATTCTAAAGACCTTATGATCGACCGGCTGAACTCTCAGATTAAACAACGGGCGCTCAATACGAGCATTACCGAAAATGATGATCTCTCGGTTTCAGCCCTTTTACCCAAGGAAGGCTGGGTATCGATACCAAACAAACAGAACATAAAAAGATATGGTTGGAAGAGACAATATTTAGTCGTTAGCAGTCGCAAGATATTCTTTTATAACTCCGACGCTGATCACAAAAGTAGTTCAACTCCTGCCATCATTCTAGAAATAAGTAAGTTGTATCACGTGAGATCTGTAACGCAAGGCGATGTCATACGTGCCGATGCTAAAGACATTCCTAGGATATTTCAGATTTTATACGCCAACGAGGCTGAAAGCATTAATCCAGTGGAAAAAGACAAAGAGGAGCAACAGACAGAGGACCGAATGAACGCGATCGACTACATGAGGCATCAATTTATTCCCATGCACTATCACATGCCTACCAACTGTGACTCGTGTAACAAACCCTTGTGGCACATGTTCAAACCTCCTCCAGCGGTCGAGTGCAAACGTTGTCATATGAAGTGTCATAAGGACCATGTCGACAGAGAAGAAGCTTGTATCACAATGTGTAACGTAAATATGGAAATGATCTCAGCCAAAGAGCTCTTGGTCCTCGCGCAAACCGCTGACGAACAGAAGCAGTGGGTGTTGTACTTGAGTAAGAAAATCATCCGAAAAGAACCCAAAATAAAGAGCGCGTCTGTAAGACTTGGAAGTGAAGAAGCCAATATGAGAAGAAACGAAACAGGAAGATTACGTGACTCGAACCATAGCCCGGCCGTTCTAGCCTTATCTAGTGAACTTGACAGTGCAGTAAAAAATAGTAATGGAATCAGTGTATACAGTAAAACAGAACATTACAGTAATAATAACGAGCGGTCACGGCACAAACAGGCCTGCGTTTCCTCGCTTGTCTTGCGAGTGAAACTAGTGGTGTTCCTGTGCGACTCAAGCAGTCCTGAGGAGCAAATAGCCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75116	Rho-associated protein kinase 2 OS=Homo sapiens OX=9606 GN=ROCK2 PE=1 SV=4
O77819	Rho-associated protein kinase 1 OS=Oryctolagus cuniculus OX=9986 GN=ROCK1 PE=1 SV=1
P70335	Rho-associated protein kinase 1 OS=Mus musculus OX=10090 GN=Rock1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002895 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08912 all species →	Rho_Binding	Rho Binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR000961 all species →	Domain	AGC-kinase, C-terminal	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR050839 all species →	Family	Rho-associated Serine/Threonine Kinase	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR015008 all species →	Domain	ROCK, Rho binding domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22988 all species →	MYOTONIC DYSTROPHY S/T KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0018107 all species →	Biological Process	peptidyl-threonine phosphorylation	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0031032 all species →	Biological Process	actomyosin structure organization	Interproscan
GO:0048598 all species →	Biological Process	embryonic morphogenesis	Interproscan
GO:0072518 all species →	Molecular Function	Rho-dependent protein serine/threonine kinase activity	Interproscan
GO:1901888 all species →	Biological Process	regulation of cell junction assembly	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.2039.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap3.2039 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

0TPM > 0

4Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole organism · cold control	14	0	0.00	0.00
whole organism · heat control	12	0	0.00	0.00
whole organism · cold challenge	12	0	0.00	0.00
whole organism · heat challenge	11	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.