Gene detail

Detailed information of evm.model.Ap3.2056 in Astrangia poculata

Genomic Location: Ap3:22389911...22402092
NR annotation: KAJ7388567.1, hypothetical protein OS493_036934 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O46629	Trifunctional enzyme subunit beta, mitochondrial OS=Bos taurus OX=9913 GN=HADHB PE=2 SV=1
Q99JY0	Trifunctional enzyme subunit beta, mitochondrial OS=Mus musculus OX=10090 GN=Hadhb PE=1 SV=1
P55084	Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=HADHB PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005142 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02803 all species →	Thiolase_C	Thiolase, C-terminal domain	Domain	Interproscan
PF00108 all species →	Thiolase_N	Thiolase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002155 all species →	Family	Thiolase	Interproscan
IPR020613 all species →	Conserved_site	Thiolase, conserved site	Interproscan
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR020610 all species →	Active_site	Thiolase, active site	Interproscan
IPR020615 all species →	Active_site	Thiolase, acyl-enzyme intermediate active site	Interproscan
IPR020617 all species →	Domain	Thiolase, C-terminal	Interproscan
IPR020616 all species →	Domain	Thiolase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18919 all species →	ACETYL-COA C-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07509	HADHB; acetyl-CoA acyltransferase	EC:2.3.1.16	Valine, leucine and isoleucine degradation	ko00280	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.