Genomic Location: Ap3:22445016...22452730
NR annotation: XP_020630690.1, laccase domain-containing protein 1-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.2058 |
| Transcript |
| evm.model.Ap3.2058 |
| Protein |
| evm.model.Ap3.2058 |
| UniProt accession | Description |
|---|---|
| Q8BZT9 | Purine nucleoside phosphorylase LACC1 OS=Mus musculus OX=10090 GN=Lacc1 PE=1 SV=1 |
| Q8IV20 | Purine nucleoside phosphorylase LACC1 OS=Homo sapiens OX=9606 GN=LACC1 PE=1 SV=1 |
| P33663 | Purine nucleoside phosphorylase PA4543 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=PA4543 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008378 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02698 all species → | DUF218 | DUF218 domain | Family | Interproscan |
| PF02578 all species → | Cu-oxidase_4 | Multi-copper polyphenol oxidoreductase laccase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003730 all species → | Family | Multi-copper polyphenol oxidoreductase | Interproscan |
| IPR011324 all species → | Homologous_superfamily | Cytotoxic necrotizing factor-like, catalytic | Interproscan |
| IPR038371 all species → | Homologous_superfamily | Multi-copper polyphenol oxidoreductase superfamily | Interproscan |
| IPR003848 all species → | Domain | Domain of unknown function DUF218 | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30616 all species → | UNCHARACTERIZED PROTEIN YFIH | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005507 all species → | Molecular Function | copper ion binding | Interproscan |
evm.model.Ap3.2058.Transcript abundance of evm.model.Ap3.2058 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
