Gene detail

Detailed information of evm.model.Ap3.2063 in Astrangia poculata

Genomic Location: Ap3:22487362...22510509
NR annotation: CAH3016658.1, unnamed protein product [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.2063

atgcctgtgatgacacagccatatgatttcaagaaatacaagtctttgatgccatcttgggaagaagttcttttgttcaatgaaatattctcgtacttcctcagtcgccaggaaacagaccctaaggttataatattctttgaggtggtagacttcctgagcatgacagctgccaaaagaagaaaaggtcctgtggcaagtgataaaggatggtatcaggtggcatgggcctttctaaaaattgtcggtgggaatggtacaccaaacacagataaaaaagtacgtcttcagctgttccagcctccaaagtcctcaatcaagtcaaacaatatagtggaggtgtatcagtggtggaagcaaaccaaacgagttccttacccatccactctttatgtaacattaaaaggagttcaaccacccaagactattgatcctagtctgcggtccatgtttgccatccaacaggaaaaaggaaaggttacctttgaagagtttgctttggatgctgaaagacgagcacatggaatgagagatggaaagaaggatagtgaacctacaaactggaacagacttcctggtcaggttaatcgtattccaaacaaacagaaggcatcccttttatctggaaagaggggctgctttattttgaaattctctcacaatggcagataccttgcatgtggctgtgctgacttggagagttttcccattcttatttatgaggtcccatcgtacgagactcgtgtttatctgccaggacatttcagtatcatctatgatctatgctgggcgcctgatgattcagaactcttgtcaacctcttctgatggtacagtcagatgctgggacacaaaagtgatgatgacgtcatccatcaagctctttccacacccatgttttgtgtatgcagcacaatatcatccaggctcccctcatatcatagtaacggggggatatgatcacctcataagggtctggaccaaactgagtgaaggactgaatggcaagcttcttagggagattgaagggcatgatggcttcattaacagtatctgctttgatgaagaaggtgccaagatgttttcagcagacagtaatggaattgttatcatttggaactcatatattcaccctcaagtggataccaagagaaagaggagaggaactggcggttatgtgtatgactggactctgtttacgaaagtagctattgatgaacttcagggtaacgtcatcaacgccctcagcctgcaccccactggacgtaagctgctggttcatgtccgcaacagtgtgctgtgcatgctggacttgaggagctataccgtcatgcaacgctatcttggtgcttccaatttcaaagagcatatccgcagcactctcagtgcatgtgggtgctttgttatcgcgggctcagaggatggctatgcatatgtgtggaacactgaaacaggtgacttggtatcagtatacacatctctcgggtatcatcatgctgttgcagatgtacagtttcaccctctcgatcacataatcgccttttgtttctttggagactcacatcctgttcttgtataccactacgatcccaaagctgctaaagaagaagctaagaagttcatgactcctccagtgactccatcaaaacaagtcactacctcacagcagaacacagctacacctgatgacgtcaccaggcatgtgcacatggctgatgtaggcagtgatgtcttacgcatgcgaaaagtcaagcagaaactggactctgtattggaaactccttcctcgtcaaactacatgaacactggaatgctaaaaacgccaggagcagaaagcctgatgtttcaaaccccagacagacccgagagcgctgggtaccccggacgcacgatgacaggaaaaagagcaggtagcgttacgttccagttccccgagagtactgaacgaacattccgccaaggcatgggcactaacatgagtctctcaacatggggttcagatttctctccgacaggatacgcaacatacgggccatccactcaaagcccaacgccgggtcaggtcccatacgagccaccactgtcgccacatgcccagcagtaccttggggcatcaggtcgtttcgagtctctaaagtatttttcagagaagaatagatacggcagcccacagtcagatatgaatggaccccagccatatcaaacacctggagtatcgtggatgaagaggccttctctgagcatgaacctcagtgattctcctggacccttgagtgtgtcacagctaaacggtgcaagacccaagtttacatttactgactcaccaacagcgcatttactacagcaggaacctcagcccaagaaaaaggttatagccatgcatccctatgatgccaacagggcagatgagctgaccattcaacccggtgacgtcataagcgtcctttatgttgacaatgagaactggtggatgggcgaaaaggctgatgggagtcagggttactttccatccaactatgtgatggaccaaggggaccttgaatctgaaggtgacttacaagagaccactgtaccgactacagcaggcgcagccaaacaggaaccaaagctcaacacacagatgactgcggttatcagcaagtccggtgatctgaagattgtttcaggacccgaggacagcagtgacgcagaaggcaaactcaacacaacggcacgtcacagaaggagacatcgagaaagagaaaagcaacaacaatccgaaggtaccccagagaaaaaagtttcaccaaggagagcaaagaagagatga

Transcript

evm.model.Ap3.2063

ATGCCTGTGATGACACAGCCATATGATTTCAAGAAATACAAGTCTTTGATGCCATCTTGGGAAGAAGTTCTTTTGTTCAATGAAATATTCTCGTACTTCCTCAGTCGCCAGGAAACAGACCCTAAGGTTATAATATTCTTTGAGGTGGTAGACTTCCTGAGCATGACAGCTGCCAAAAGAAGAAAAGGTCCTGTGGCAAGTGATAAAGGATGGTATCAGGTGGCATGGGCCTTTCTAAAAATTGTCGGTGGGAATGGTACACCAAACACAGATAAAAAAGTACGTCTTCAGCTGTTCCAGCCTCCAAAGTCCTCAATCAAGTCAAACAATATAGTGGAGGTGTATCAGTGGTGGAAGCAAACCAAACGAGTTCCTTACCCATCCACTCTTTATGTAACATTAAAAGGAGTTCAACCACCCAAGACTATTGATCCTAGTCTGCGGTCCATGTTTGCCATCCAACAGGAAAAAGGAAAGGTTACCTTTGAAGAGTTTGCTTTGGATGCTGAAAGACGAGCACATGGAATGAGAGATGGAAAGAAGGATAGTGAACCTACAAACTGGAACAGACTTCCTGGTCAGGTTAATCGTATTCCAAACAAACAGAAGGCATCCCTTTTATCTGGAAAGAGGGGCTGCTTTATTTTGAAATTCTCTCACAATGGCAGATACCTTGCATGTGGCTGTGCTGACTTGGAGAGTTTTCCCATTCTTATTTATGAGGTCCCATCGTACGAGACTCGTGTTTATCTGCCAGGACATTTCAGTATCATCTATGATCTATGCTGGGCGCCTGATGATTCAGAACTCTTGTCAACCTCTTCTGATGGTACAGTCAGATGCTGGGACACAAAAGTGATGATGACGTCATCCATCAAGCTCTTTCCACACCCATGTTTTGTGTATGCAGCACAATATCATCCAGGCTCCCCTCATATCATAGTAACGGGGGGATATGATCACCTCATAAGGGTCTGGACCAAACTGAGTGAAGGACTGAATGGCAAGCTTCTTAGGGAGATTGAAGGGCATGATGGCTTCATTAACAGTATCTGCTTTGATGAAGAAGGTGCCAAGATGTTTTCAGCAGACAGTAATGGAATTGTTATCATTTGGAACTCATATATTCACCCTCAAGTGGATACCAAGAGAAAGAGGAGAGGAACTGGCGGTTATGTGTATGACTGGACTCTGTTTACGAAAGTAGCTATTGATGAACTTCAGGGTAACGTCATCAACGCCCTCAGCCTGCACCCCACTGGACGTAAGCTGCTGGTTCATGTCCGCAACAGTGTGCTGTGCATGCTGGACTTGAGGAGCTATACCGTCATGCAACGCTATCTTGGTGCTTCCAATTTCAAAGAGCATATCCGCAGCACTCTCAGTGCATGTGGGTGCTTTGTTATCGCGGGCTCAGAGGATGGCTATGCATATGTGTGGAACACTGAAACAGGTGACTTGGTATCAGTATACACATCTCTCGGGTATCATCATGCTGTTGCAGATGTACAGTTTCACCCTCTCGATCACATAATCGCCTTTTGTTTCTTTGGAGACTCACATCCTGTTCTTGTATACCACTACGATCCCAAAGCTGCTAAAGAAGAAGCTAAGAAGTTCATGACTCCTCCAGTGACTCCATCAAAACAAGTCACTACCTCACAGCAGAACACAGCTACACCTGATGACGTCACCAGGCATGTGCACATGGCTGATGTAGGCAGTGATGTCTTACGCATGCGAAAAGTCAAGCAGAAACTGGACTCTGTATTGGAAACTCCTTCCTCGTCAAACTACATGAACACTGGAATGCTAAAAACGCCAGGAGCAGAAAGCCTGATGTTTCAAACCCCAGACAGACCCGAGAGCGCTGGGTACCCCGGACGCACGATGACAGGAAAAAGAGCAGGTAGCGTTACGTTCCAGTTCCCCGAGAGTACTGAACGAACATTCCGCCAAGGCATGGGCACTAACATGAGTCTCTCAACATGGGGTTCAGATTTCTCTCCGACAGGATACGCAACATACGGGCCATCCACTCAAAGCCCAACGCCGGGTCAGGTCCCATACGAGCCACCACTGTCGCCACATGCCCAGCAGTACCTTGGGGCATCAGGTCGTTTCGAGTCTCTAAAGTATTTTTCAGAGAAGAATAGATACGGCAGCCCACAGTCAGATATGAATGGACCCCAGCCATATCAAACACCTGGAGTATCGTGGATGAAGAGGCCTTCTCTGAGCATGAACCTCAGTGATTCTCCTGGACCCTTGAGTGTGTCACAGCTAAACGGTGCAAGACCCAAGTTTACATTTACTGACTCACCAACAGCGCATTTACTACAGCAGGAACCTCAGCCCAAGAAAAAGGTTATAGCCATGCATCCCTATGATGCCAACAGGGCAGATGAGCTGACCATTCAACCCGGTGACGTCATAAGCGTCCTTTATGTTGACAATGAGAACTGGTGGATGGGCGAAAAGGCTGATGGGAGTCAGGGTTACTTTCCATCCAACTATGTGATGGACCAAGGGGACCTTGAATCTGAAGGTGACTTACAAGAGACCACTGTACCGACTACAGCAGGCGCAGCCAAACAGGAACCAAAGCTCAACACACAGATGACTGCGGTTATCAGCAAGTCCGGTGATCTGAAGATTGTTTCAGGACCCGAGGACAGCAGTGACGCAGAAGGCAAACTCAACACAACGGCACGTCACAGAAGGAGACATCGAGAAAGAGAAAAGCAACAACAATCCGAAGGTACCCCAGAGAAAAAAGTTTCACCAAGGAGAGCAAAGAAGAGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K3E5	Jouberin OS=Mus musculus OX=10090 GN=Ahi1 PE=1 SV=2
Q6DTM3	Jouberin OS=Rattus norvegicus OX=10116 GN=Ahi1 PE=1 SV=1
Q8N157	Jouberin OS=Homo sapiens OX=9606 GN=AHI1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003417 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR052803 all species →	Family	Primary Cilium-Associated Jouberin	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44499 all species →	JOUBERIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0044458 all species →	Biological Process	motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16740	AHI1; jouberin	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.