Detailed information of evm.model.Ap3.2110 in Astrangia poculata

Genomic Location: Ap3:22889233...22892598
NR annotation: RMX53822.1, hypothetical protein pdam_00000262 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4R3M6NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Macaca fascicularis OX=9541 GN=NDUFS5 PE=3 SV=3
P0CB87NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Pongo abelii OX=9601 GN=NDUFS5 PE=3 SV=1
P0CB88NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Pongo pygmaeus OX=9600 GN=NDUFS5 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0011386 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10200
all species →		Ndufs5NADH:ubiquinone oxidoreductase, NDUFS5-15kDaFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019342
all species →		FamilyNADH:ubiquinone oxidoreductase, iron-sulphur subunit 5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15224
all species →		NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005747
all species →		Cellular Componentobsolete mitochondrial respiratory chain complex IInterproscan
GO:0032981
all species →		Biological Processmitochondrial respiratory chain complex I assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.2110.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap3.2110 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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