Genomic Location: Ap3:22894814...22922340
NR annotation: XP_020606751.1, LOW QUALITY PROTEIN: thrombospondin-1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.2111 |
| Transcript |
| evm.model.Ap3.2111 |
| Protein |
| evm.model.Ap3.2111 |
| UniProt accession | Description |
|---|---|
| Q03350 | Thrombospondin-2 OS=Mus musculus OX=10090 GN=Thbs2 PE=1 SV=2 |
| P07996 | Thrombospondin-1 OS=Homo sapiens OX=9606 GN=THBS1 PE=1 SV=2 |
| P35441 | Thrombospondin-1 OS=Mus musculus OX=10090 GN=Thbs1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004174 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00629 all species → | MAM | MAM domain, meprin/A5/mu | Domain | Interproscan |
| PF05735 all species → | TSP_C | Thrombospondin C-terminal region | Family | Interproscan |
| PF13385 all species → | Laminin_G_3 | Concanavalin A-like lectin/glucanases superfamily | Domain | Interproscan |
| PF00084 all species → | Sushi | Sushi repeat (SCR repeat) | Domain | Interproscan |
| PF02412 all species → | TSP_3 | Thrombospondin type 3 repeat | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000998 all species → | Domain | MAM domain | Interproscan |
| IPR008859 all species → | Domain | Thrombospondin, C-terminal | Interproscan |
| IPR017897 all species → | Repeat | Thrombospondin, type 3 repeat | Interproscan |
| IPR000436 all species → | Domain | Sushi/SCR/CCP domain | Interproscan |
| IPR028974 all species → | Homologous_superfamily | TSP type-3 repeat | Interproscan |
| IPR035976 all species → | Homologous_superfamily | Sushi/SCR/CCP superfamily | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR003367 all species → | Repeat | Thrombospondin, type 3-like repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10199 all species → | THROMBOSPONDIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0007155 all species → | Biological Process | cell adhesion | Interproscan |
| GO:0062023 all species → | Cellular Component | collagen-containing extracellular matrix | Interproscan |
evm.model.Ap3.2111.Transcript abundance of evm.model.Ap3.2111 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
