Detailed information of evm.model.Ap3.2129 in Astrangia poculata

Genomic Location: Ap3:23154863...23161232
NR annotation: XP_020623502.1, protein LTV1 homolog [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96GA3Protein LTV1 homolog OS=Homo sapiens OX=9606 GN=LTV1 PE=1 SV=1
Q5R8B2Protein LTV1 homolog OS=Pongo abelii OX=9601 GN=LTV1 PE=2 SV=1
Q6NSQ7Protein LTV1 homolog OS=Mus musculus OX=10090 GN=Ltv1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006410 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04180
all species →		LTVLow temperature viability protein FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007307
all species →		FamilyLow temperature viability protein Ltv1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21531
all species →		LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0042274
all species →		Biological Processribosomal small subunit biogenesisInterproscan
GO:0000056
all species →		Biological Processribosomal small subunit export from nucleusInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0030688
all species →		Cellular Componentpreribosome, small subunit precursorInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.2129.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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