Genomic Location: Ap3:23760232...23774998
NR annotation: XP_022781537.1, uncharacterized protein LOC111322664 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.2173 |
| Transcript |
| evm.model.Ap3.2173 |
| Protein |
| evm.model.Ap3.2173 |
| UniProt accession | Description |
|---|---|
| Q76I79 | Protein phosphatase Slingshot homolog 1 OS=Mus musculus OX=10090 GN=Ssh1 PE=1 SV=1 |
| Q8WYL5 | Protein phosphatase Slingshot homolog 1 OS=Homo sapiens OX=9606 GN=SSH1 PE=1 SV=2 |
| Q76I76 | Protein phosphatase Slingshot homolog 2 OS=Homo sapiens OX=9606 GN=SSH2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003902 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08766 all species → | DEK_C | DEK C terminal domain | Domain | Interproscan |
| PF00782 all species → | DSPc | Dual specificity phosphatase, catalytic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014876 all species → | Domain | DEK, C-terminal | Interproscan |
| IPR043587 all species → | Family | Protein phosphatase Slingshot-like | Interproscan |
| IPR020422 all species → | Domain | Dual specificity protein phosphatase domain | Interproscan |
| IPR000387 all species → | Domain | Tyrosine-specific protein phosphatases domain | Interproscan |
| IPR016130 all species → | Active_site | Protein-tyrosine phosphatase, active site | Interproscan |
| IPR029021 all species → | Homologous_superfamily | Protein-tyrosine phosphatase-like | Interproscan |
| IPR000340 all species → | Domain | Dual specificity phosphatase, catalytic domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45864 all species → | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003779 all species → | Molecular Function | actin binding | Interproscan |
| GO:0004721 all species → | Molecular Function | phosphoprotein phosphatase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016791 all species → | Molecular Function | phosphatase activity | Interproscan |
| GO:0030036 all species → | Biological Process | actin cytoskeleton organization | Interproscan |
| GO:0030837 all species → | Biological Process | negative regulation of actin filament polymerization | Interproscan |
| GO:0006470 all species → | Biological Process | protein dephosphorylation | Interproscan |
| GO:0016311 all species → | Biological Process | dephosphorylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05766 | SSH; protein phosphatase slingshot | EC:3.1.3.16 EC:3.1.3.48 | Protein phosphatases and associated proteins | ko01009 | deepkoala |
Transcript abundance of evm.model.Ap3.2173 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
