Gene detail

Detailed information of evm.model.Ap3.2190 in Astrangia poculata

Genomic Location: Ap3:23928107...23947572
NR annotation: KAJ7374124.1, hypothetical protein OS493_009461 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.2190

gtttctatcaataatgacgctgtgggaaagccaatggctcatgtttcatcgcagatgcaggtcacaggtgaagctacctatgcagatgatacacctcaatacaaaggcaaaagactagaaaaaggtgaaggagaggtgtttctggcacgggtgttaagtcagcgggcacacgcaaaaattgtatcagtggattatagcgaagcaatgtcatacaagggtgtaataacgcacgttgattccaatgatatccccggtgaaaagtttatcacagacgatgaatccctgtttgcaacagataaggtaacgtgtgtcggtcaggtgatcggtgcagtgatcgccgagacaaaagatgccgccttgaaagcagctaaagctgtcaagattgaatacgaagatctgcagccgataattacaatcgaggatgcaattgctgctaattcgtatctttctcaagaaagaaagatcgaacgtggagatgtgagtgtgggatttaatgcttcagatcacattataagcagtgagctgtacattggaggacaggaacatttttacatggagccacaagtaagcatagctttgcctaaaagggaacacaacgaaatggaaataatctcttcaacgcagtggcccacatttgcacagttcgaccacgacggcaacgtgaacgagaacgtcaccaaagaaaagctcattattggcaatgttcttggcgtaccatataatcgtatcacagtgcggaccaagcgattaggtggtgcatttggtgggaaggacagtggcagttttcctttgtcctgtgcaacagccgtggctgcttacaaaactggtcgtccagtaagatcagttttagaccgcaaagaagacatgatttcaactggaaagagacaccctttcctagccagatgcaaggtcggctgcacggcgaatgggaaaatcaaagcattggatgtgcaactgtttgtcaatggtggaaattccatggacgtttctgaaatgattgtggataacgcactctatcacttagacaatgcttactttattccaaacttcagaggcgttggcagagtgtgcaaaactaacactataagcaacacggccatgaggggatttggggctccacaggctgttttgatcattgagactttgatatcagcgattggaaagacgtgtggacttaaccagagacaagtaagggaacaaaacttttatcaagaacatgaactgacccacctgagccagaaattggagaattgcacaattaaactcgtgtggcaggaattgcttgataagagtgactttcaggcaagagaacttcaagtcaatgagtttaacaggatcaatcgctggcgcaaacgagggatagcacttaatcccctcaagtatggcattggctttggaataaaacgcattaactacggtacagctttggttcatgtgtacactgacggatcggttcttgtaagtcacggtggagtagaaatgggtcaagggctgcataccaaaatgatgcaggtcacatcacaggagctaggaattccaatgtcaaagattcacatcaaagagacgtcaacagagtcggttccaaatactgcaccaactggagcatctgttgctacagacatcaatggaatggcagttgccgacgcctgtaaaaagatcataaatcgcctagattcttatagacaggaaaaccctcaagcctcctgggaggagctggtcaagatctctcacgccgacagagtaagcctttcagctacaggatattacaggatgcctgaagcgggttatgatttgaaaaccaatcgaatgaagtttcggtactttacctttggagctgcttgttcagaggttgagatcgactgcctaacaggtgatcacgaggttcttcgcactgacattgtaatggatcttggtaggagcctcaatcctggcattgatattggacagattgaaggggcgtttgtccaaggaatgggtctctttacaacagagcaattagaatttaccagtcaaggaaatctgctgcctacagggcctaacagctacatgattccaaccatgtcggacatccctgctgagttctatatccatttgttgcctggcgttcaaaaccctaaaggaatttattcctccaaggctgtaggtgaaccaccgcttatatgtgcagtctcagtatatcaagccatcaaaaacgcaatctctgcagcaagagaggaggttggattgagtggttcttttagattggataccccagccacctctgaaaggatcagaatgtcttgttcgccgcatttggctgatataaaaacgtcacactcttga

Transcript

evm.model.Ap3.2190

GTTTCTATCAATAATGACGCTGTGGGAAAGCCAATGGCTCATGTTTCATCGCAGATGCAGGTCACAGGTGAAGCTACCTATGCAGATGATACACCTCAATACAAAGGCAAAAGACTAGAAAAAGGTGAAGGAGAGGTGTTTCTGGCACGGGTGTTAAGTCAGCGGGCACACGCAAAAATTGTATCAGTGGATTATAGCGAAGCAATGTCATACAAGGGTGTAATAACGCACGTTGATTCCAATGATATCCCCGGTGAAAAGTTTATCACAGACGATGAATCCCTGTTTGCAACAGATAAGGTAACGTGTGTCGGTCAGGTGATCGGTGCAGTGATCGCCGAGACAAAAGATGCCGCCTTGAAAGCAGCTAAAGCTGTCAAGATTGAATACGAAGATCTGCAGCCGATAATTACAATCGAGGATGCAATTGCTGCTAATTCGTATCTTTCTCAAGAAAGAAAGATCGAACGTGGAGATGTGAGTGTGGGATTTAATGCTTCAGATCACATTATAAGCAGTGAGCTGTACATTGGAGGACAGGAACATTTTTACATGGAGCCACAAGTAAGCATAGCTTTGCCTAAAAGGGAACACAACGAAATGGAAATAATCTCTTCAACGCAGTGGCCCACATTTGCACAGTTCGACCACGACGGCAACGTGAACGAGAACGTCACCAAAGAAAAGCTCATTATTGGCAATGTTCTTGGCGTACCATATAATCGTATCACAGTGCGGACCAAGCGATTAGGTGGTGCATTTGGTGGGAAGGACAGTGGCAGTTTTCCTTTGTCCTGTGCAACAGCCGTGGCTGCTTACAAAACTGGTCGTCCAGTAAGATCAGTTTTAGACCGCAAAGAAGACATGATTTCAACTGGAAAGAGACACCCTTTCCTAGCCAGATGCAAGGTCGGCTGCACGGCGAATGGGAAAATCAAAGCATTGGATGTGCAACTGTTTGTCAATGGTGGAAATTCCATGGACGTTTCTGAAATGATTGTGGATAACGCACTCTATCACTTAGACAATGCTTACTTTATTCCAAACTTCAGAGGCGTTGGCAGAGTGTGCAAAACTAACACTATAAGCAACACGGCCATGAGGGGATTTGGGGCTCCACAGGCTGTTTTGATCATTGAGACTTTGATATCAGCGATTGGAAAGACGTGTGGACTTAACCAGAGACAAGTAAGGGAACAAAACTTTTATCAAGAACATGAACTGACCCACCTGAGCCAGAAATTGGAGAATTGCACAATTAAACTCGTGTGGCAGGAATTGCTTGATAAGAGTGACTTTCAGGCAAGAGAACTTCAAGTCAATGAGTTTAACAGGATCAATCGCTGGCGCAAACGAGGGATAGCACTTAATCCCCTCAAGTATGGCATTGGCTTTGGAATAAAACGCATTAACTACGGTACAGCTTTGGTTCATGTGTACACTGACGGATCGGTTCTTGTAAGTCACGGTGGAGTAGAAATGGGTCAAGGGCTGCATACCAAAATGATGCAGGTCACATCACAGGAGCTAGGAATTCCAATGTCAAAGATTCACATCAAAGAGACGTCAACAGAGTCGGTTCCAAATACTGCACCAACTGGAGCATCTGTTGCTACAGACATCAATGGAATGGCAGTTGCCGACGCCTGTAAAAAGATCATAAATCGCCTAGATTCTTATAGACAGGAAAACCCTCAAGCCTCCTGGGAGGAGCTGGTCAAGATCTCTCACGCCGACAGAGTAAGCCTTTCAGCTACAGGATATTACAGGATGCCTGAAGCGGGTTATGATTTGAAAACCAATCGAATGAAGTTTCGGTACTTTACCTTTGGAGCTGCTTGTTCAGAGGTTGAGATCGACTGCCTAACAGGTGATCACGAGGTTCTTCGCACTGACATTGTAATGGATCTTGGTAGGAGCCTCAATCCTGGCATTGATATTGGACAGATTGAAGGGGCGTTTGTCCAAGGAATGGGTCTCTTTACAACAGAGCAATTAGAATTTACCAGTCAAGGAAATCTGCTGCCTACAGGGCCTAACAGCTACATGATTCCAACCATGTCGGACATCCCTGCTGAGTTCTATATCCATTTGTTGCCTGGCGTTCAAAACCCTAAAGGAATTTATTCCTCCAAGGCTGTAGGTGAACCACCGCTTATATGTGCAGTCTCAGTATATCAAGCCATCAAAAACGCAATCTCTGCAGCAAGAGAGGAGGTTGGATTGAGTGGTTCTTTTAGATTGGATACCCCAGCCACCTCTGAAAGGATCAGAATGTCTTGTTCGCCGCATTTGGCTGATATAAAAACGTCACACTCTTGAAGAAAACGGGGTCAACGATGTCTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47990	Xanthine dehydrogenase/oxidase OS=Gallus gallus OX=9031 GN=XDH PE=1 SV=1
Q00519	Xanthine dehydrogenase/oxidase OS=Mus musculus OX=10090 GN=Xdh PE=1 SV=5
Q9MYW6	Xanthine dehydrogenase/oxidase OS=Felis catus OX=9685 GN=XDH PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001294 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20256 all species →	MoCoBD_2	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF02738 all species →	MoCoBD_1	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF01315 all species →	Ald_Xan_dh_C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037165 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Interproscan
IPR016208 all species →	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR046867 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain	Interproscan
IPR036856 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Interproscan
IPR008274 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Interproscan
IPR000674 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11908 all species →	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13482	xdhB; xanthine dehydrogenase large subunit	EC:1.17.1.4	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.