Gene detail

Detailed information of evm.model.Ap3.2239 in Astrangia poculata

Genomic Location: Ap3:24425464...24426633
NR annotation: XP_020631776.1, uncharacterized protein LOC110068723 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N4B1	Sesquipedalian-1 OS=Homo sapiens OX=9606 GN=PHETA1 PE=1 SV=1
D3ZL52	Sesquipedalian-1 OS=Rattus norvegicus OX=10116 GN=Pheta1 PE=1 SV=1
Q8BH49	Sesquipedalian-1 OS=Mus musculus OX=10090 GN=Pheta1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009694 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR045188 all species →	Family	PH domain containing protein Boi1/Boi2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22902 all species →	SESQUIPEDALIAN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001881 all species →	Biological Process	receptor recycling	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23791	PHETA; sesquipedalian	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.