Gene detail

Detailed information of evm.model.Ap3.2401 in Astrangia poculata

Genomic Location: Ap3:26086610...26097615
NR annotation: KAJ7373931.1, Merlin [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32LP2	Radixin OS=Bos taurus OX=9913 GN=RDX PE=2 SV=1
P35241	Radixin OS=Homo sapiens OX=9606 GN=RDX PE=1 SV=1
P26043	Radixin OS=Mus musculus OX=10090 GN=Rdx PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001429 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20492 all species →	ERM_helical	Ezrin/radixin/moesin, alpha-helical domain	Coiled-coil	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF00769 all species →	ERM_C	Ezrin/radixin/moesin family C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019747 all species →	Conserved_site	FERM conserved site	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR046810 all species →	Domain	Ezrin/radixin/moesin, alpha-helical domain	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR008954 all species →	Homologous_superfamily	Moesin tail domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR041789 all species →	Domain	ERM family, FERM domain C-lobe	Interproscan
IPR000798 all species →	Family	Ezrin/radixin/moesin-like	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR011174 all species →	Family	Ezrin/radixin/moesin	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR011259 all species →	Domain	Ezrin/radixin/moesin, C-terminal	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23281 all species →	MERLIN/MOESIN/EZRIN/RADIXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0008092 all species →	Molecular Function	cytoskeletal protein binding	Interproscan
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0008360 all species →	Biological Process	regulation of cell shape	Interproscan
GO:0030175 all species →	Cellular Component	filopodium	Interproscan
GO:0035330 all species →	Biological Process	regulation of hippo signaling	Interproscan
GO:0045177 all species →	Cellular Component	apical part of cell	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:1902115 all species →	Biological Process	regulation of organelle assembly	Interproscan
GO:1902966 all species →	Biological Process	positive regulation of protein localization to early endosome	Interproscan
GO:2000643 all species →	Biological Process	positive regulation of early endosome to late endosome transport	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.2401.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.