Genomic Location: Ap3:26192029...26200887
NR annotation: CAH3029258.1, unnamed protein product [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.2405 |
| Transcript |
| evm.model.Ap3.2405 |
| Protein |
| evm.model.Ap3.2405 |
| UniProt accession | Description |
|---|---|
| Q4LDE5 | Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SVEP1 PE=1 SV=3 |
| Q15818 | Neuronal pentraxin-1 OS=Homo sapiens OX=9606 GN=NPTX1 PE=1 SV=2 |
| P47970 | Neuronal pentraxin-2 OS=Cavia porcellus OX=10141 GN=NPTX2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000095 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00354 all species → | Pentaxin | Pentaxin family | Domain | Interproscan |
| PF00040 all species → | fn2 | Fibronectin type II domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036943 all species → | Homologous_superfamily | Fibronectin type II domain superfamily | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR001759 all species → | Family | Pentraxin-related | Interproscan |
| IPR051360 all species → | Family | Neuronal Pentraxin and Related | Interproscan |
| IPR013806 all species → | Homologous_superfamily | Kringle-like fold | Interproscan |
| IPR000562 all species → | Domain | Fibronectin type II domain | Interproscan |
| IPR030476 all species → | Conserved_site | Pentaxin, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19277 all species → | PENTRAXIN | Interproscan |
evm.model.Ap3.2405. This gene does have a gene model — the search simply returned no hit.evm.model.Ap3.2405.Transcript abundance of evm.model.Ap3.2405 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
