Gene detail

Detailed information of evm.model.Ap3.2413 in Astrangia poculata

Genomic Location: Ap3:26242210...26248842
NR annotation: XP_022792119.1, cytosolic phospholipase A2-like [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.2413

atgatactcaagaacgaaacacaagggaatacaattcaagaaacaacagcgtttgcgcataatatacaggctactccaagatcgtgtatagcgatcagaatcagtgtgttaagagccaggaacgttacacaaggatggtacgactggatcgatactccagatccatatttaaggatgagaattcccacatcacctgaagtagtcaaaagaactaaatgcgtgtcaaacaacaagaaccctgtgtggaaggaagagccattcgtttttcacattgatcctgaagcgaacaacgttttagagcttaccttatgggatgaagattatgacgccgatgatcagattggcgaagcagagtgcttatccctgaaaaatatacgtctcggcataccagagcacaagacattgaaatttggagagcattccgaagtcgacatcatcttagaggcgtctggagttgctgaacagtattcagacctgcgttacagctcagacttgtgtgacgaggagaaagaattcagagaaaagaggaaagctatcgtgtttgaagctatgaacaaaatgttaggagatcagggaccacaaaatatggatgaggttcccacgatagccgtccttggatcagggggaggttaccgagccacaacgggctttagtgccgcgtgtcgtgctctggaagagatggacttgttaaactgtgttacttatctgaccggtttatccggttctgcctggggcctgtcattgttgtattctcaaactacgggcgaaaacgtcgatcccagggagacacagaagaatatcagggaacagctacagtgggggcccatgtggttactcacccccaggagagtgatgcagtacgttaaagaaatcaccgagaaatttaagaaaggacagcctgttagtctgacagatttctatggccactgtgttggggagagtctgctgggtccgaaaaagaactcagttaaattgagccatcaacaagagaaggtccaaaatggcgccgttcccatgccgatatacaccgctattaactctagacgagacatatcagcacagtcatttgcagaatgggtggagttcactccttatgagatcggaatggataaatacggcacattcatgagaacagaactgtttggaagcaagttcttttgcggaaaactaattgagaagttcccggaatctccgctgtactacctacaaggaatttggggaagtttttacgccattcttcttaatcgagtcttgaaagaagaaaaacagataaatacagaacaagacaacgagcaaaaactcttagaaaaacagttcttctcagaaaacaacaacgatgacgactctgacgatgacgaagaggaagttgagaacgcggcagcgcctgggaataagaaaaacattgaaagcgaccttatgtccaaactgcaaaatgatgttaaagcggatgaagaaactcacaagttggataaccaagcgacgaaaaaccagaaaacagagaagaaagagtttaggagaagagtcatagattacgtacttgaaaagctaccaggcctcaaaactcggtcaagaagagccgggcttgttcacaactttctgcgaggcctgggactcactggaccgcaaggctacacagacggcgcaggaacgatgtgtcctttcgaaagggaaaacacttgtatacagaaaaaacggatggagcttattgatgctggattgatgttcaactctccttacccacctctcctaagggaagagaggtccgtggatctgatcctgtcatttgacttcagtgccagggagtcggacgaggaaagaccttttaagaacattaaattagctgaggattgggccaaacgaaacggtcttcccttcccgccaatcgacgcggacgagcagtttgaccgagagggctggaaagagtgttatgtattcaaggatccaacaaaccccaagtgtcccatagtgcttcactttgttcttgtcaacaagacttacagagatttcgtacggccaggaatccctcgaataacgaaagaagaaaagaaagctggcgatttcccagtctttgacgatccggataaacgtttcagtacgttcaacttgaaatactctcatgacatcttcgacaggcttagtgggttggttgaattcaacacggcgcttaatgaacagcttataaaagacacgatggcagaatgcgtacagaggaggagaacacttaatcactaa

Transcript

evm.model.Ap3.2413

ATGATACTCAAGAACGAAACACAAGGGAATACAATTCAAGAAACAACAGCGTTTGCGCATAATATACAGGCTACTCCAAGATCGTGTATAGCGATCAGAATCAGTGTGTTAAGAGCCAGGAACGTTACACAAGGATGGTACGACTGGATCGATACTCCAGATCCATATTTAAGGATGAGAATTCCCACATCACCTGAAGTAGTCAAAAGAACTAAATGCGTGTCAAACAACAAGAACCCTGTGTGGAAGGAAGAGCCATTCGTTTTTCACATTGATCCTGAAGCGAACAACGTTTTAGAGCTTACCTTATGGGATGAAGATTATGACGCCGATGATCAGATTGGCGAAGCAGAGTGCTTATCCCTGAAAAATATACGTCTCGGCATACCAGAGCACAAGACATTGAAATTTGGAGAGCATTCCGAAGTCGACATCATCTTAGAGGCGTCTGGAGTTGCTGAACAGTATTCAGACCTGCGTTACAGCTCAGACTTGTGTGACGAGGAGAAAGAATTCAGAGAAAAGAGGAAAGCTATCGTGTTTGAAGCTATGAACAAAATGTTAGGAGATCAGGGACCACAAAATATGGATGAGGTTCCCACGATAGCCGTCCTTGGATCAGGGGGAGGTTACCGAGCCACAACGGGCTTTAGTGCCGCGTGTCGTGCTCTGGAAGAGATGGACTTGTTAAACTGTGTTACTTATCTGACCGGTTTATCCGGTTCTGCCTGGGGCCTGTCATTGTTGTATTCTCAAACTACGGGCGAAAACGTCGATCCCAGGGAGACACAGAAGAATATCAGGGAACAGCTACAGTGGGGGCCCATGTGGTTACTCACCCCCAGGAGAGTGATGCAGTACGTTAAAGAAATCACCGAGAAATTTAAGAAAGGACAGCCTGTTAGTCTGACAGATTTCTATGGCCACTGTGTTGGGGAGAGTCTGCTGGGTCCGAAAAAGAACTCAGTTAAATTGAGCCATCAACAAGAGAAGGTCCAAAATGGCGCCGTTCCCATGCCGATATACACCGCTATTAACTCTAGACGAGACATATCAGCACAGTCATTTGCAGAATGGGTGGAGTTCACTCCTTATGAGATCGGAATGGATAAATACGGCACATTCATGAGAACAGAACTGTTTGGAAGCAAGTTCTTTTGCGGAAAACTAATTGAGAAGTTCCCGGAATCTCCGCTGTACTACCTACAAGGAATTTGGGGAAGTTTTTACGCCATTCTTCTTAATCGAGTCTTGAAAGAAGAAAAACAGATAAATACAGAACAAGACAACGAGCAAAAACTCTTAGAAAAACAGTTCTTCTCAGAAAACAACAACGATGACGACTCTGACGATGACGAAGAGGAAGTTGAGAACGCGGCAGCGCCTGGGAATAAGAAAAACATTGAAAGCGACCTTATGTCCAAACTGCAAAATGATGTTAAAGCGGATGAAGAAACTCACAAGTTGGATAACCAAGCGACGAAAAACCAGAAAACAGAGAAGAAAGAGTTTAGGAGAAGAGTCATAGATTACGTACTTGAAAAGCTACCAGGCCTCAAAACTCGGTCAAGAAGAGCCGGGCTTGTTCACAACTTTCTGCGAGGCCTGGGACTCACTGGACCGCAAGGCTACACAGACGGCGCAGGAACGATGTGTCCTTTCGAAAGGGAAAACACTTGTATACAGAAAAAACGGATGGAGCTTATTGATGCTGGATTGATGTTCAACTCTCCTTACCCACCTCTCCTAAGGGAAGAGAGGTCCGTGGATCTGATCCTGTCATTTGACTTCAGTGCCAGGGAGTCGGACGAGGAAAGACCTTTTAAGAACATTAAATTAGCTGAGGATTGGGCCAAACGAAACGGTCTTCCCTTCCCGCCAATCGACGCGGACGAGCAGTTTGACCGAGAGGGCTGGAAAGAGTGTTATGTATTCAAGGATCCAACAAACCCCAAGTGTCCCATAGTGCTTCACTTTGTTCTTGTCAACAAGACTTACAGAGATTTCGTACGGCCAGGAATCCCTCGAATAACGAAAGAAGAAAAGAAAGCTGGCGATTTCCCAGTCTTTGACGATCCGGATAAACGTTTCAGTACGTTCAACTTGAAATACTCTCATGACATCTTCGACAGGCTTAGTGGGTTGGTTGAATTCAACACGGCGCTTAATGAACAGCTTATAAAAGACACGATGGCAGAATGCGTACAGAGGAGGAGAACACTTAATCACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B1WAZ6	Cytosolic phospholipase A2 OS=Xenopus tropicalis OX=8364 GN=pla2g4a PE=2 SV=1
Q7T0T9	Cytosolic phospholipase A2 OS=Xenopus laevis OX=8355 GN=pla2g4a PE=2 SV=1
O77793	Cytosolic phospholipase A2 OS=Equus caballus OX=9796 GN=PLA2G4A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001136 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF01735 all species →	PLA2_B	Lysophospholipase catalytic domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR002642 all species →	Domain	Lysophospholipase, catalytic domain	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10728 all species →	CYTOSOLIC PHOSPHOLIPASE A2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004623 all species →	Molecular Function	phospholipase A2 activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0046475 all species →	Biological Process	glycerophospholipid catabolic process	Interproscan
GO:0047498 all species →	Molecular Function	calcium-dependent phospholipase A2 activity	Interproscan
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16342	PLA2G4, CPLA2; cytosolic phospholipase A2	EC:3.1.1.4	Choline metabolism in cancer	ko05231	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.