Detailed information of evm.model.Ap3.2419 in Astrangia poculata

Genomic Location: Ap3:26320481...26325162
NR annotation: XP_020623570.1, transcriptional regulator Myc-1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q17103Myc protein (Fragment) OS=Asterias rubens OX=7604 GN=MYC PE=2 SV=1
Q90341Transcriptional regulator Myc-1 OS=Cyprinus carpio OX=7962 GN=myca PE=3 SV=1
P49709Transcriptional regulator Myc OS=Carassius auratus OX=7957 GN=myc PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002214 (this species only)
Transcription factor familybHLH · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00010
all species →		HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF01056
all species →		Myc_NMyc amino-terminal regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036638
all species →		Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR002418
all species →		FamilyTranscription regulator MycInterproscan
IPR011598
all species →		DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR012682
all species →		DomainTranscription regulator Myc, N-terminalInterproscan
IPR050433
all species →		FamilyMyc family transcription factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45851
all species →		MYC PROTO-ONCOGENEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046983
all species →		Molecular Functionprotein dimerization activityInterproscan
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.2419.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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