Gene detail

Detailed information of evm.model.Ap3.2442 in Astrangia poculata

Genomic Location: Ap3:26532759...26550023
NR annotation: XP_027052962.1, exportin-2-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.2442

atggccgacttagatgcgaacgcagtggcgctgaatttgaaaaatacgttatcaccggaggcaaacgttcggaaacaagctgagaagttccttgaatcagtggaaggaaagcagaaatacaatgttcttctactgaacatagtggacaatgcgtctgcagatggattgattagagttgctgcggcgattgcattcaagaacagtgtgaaacgaaactggagaattattcctgatgagcccaacaagatcagtgacagtgatagagaaacaattaaaagagagattgttgatcttatgcttagaagtccagaaaaactacagaaacagctaagtgatgctgtcagtgtgataggccgagaagattttcctgataagtggggaaacttgttaccagaactcgtagccaagtttggcagtggagattttcacttaatcaatggagttcttcagacagcccactcattgtttaaaagatatcgtcatgaattcaagtctcaggaactgtggactgagattaagttagtgttggatggttttgcacagcatctcacaaatctgtttgaggccataatggaagaagccaacagatgcggcggtgaccatgcaaaacttaaagacatcctcagctctatcttgctcatctgcaaagtgttctacagtttgaactttcaggacttgcctgaacactttgaggaaaacatggagaagtggatgaaaaactttctcattctcctgacaacagacagcaagcaactgcaactagaggagactgatgagactggacctttagatttgatcaaatcacaagtctgtgacaatgtagcattgtatgctcaaaaatatgacgaagattttgagaattacctgccaaagtttgtggaagctatttggcaactccttgtctcgacagaaaaactagcaaaacatgacattgttgttagtaatgctattgggttccttgcctcagcgtcagagagaaatcactataaatacctgtttgaaaaacaagaaactttaaaaagcatatgtgagaatgtggttgttccaaacatagagtttagagaggaagatgaagaagtttttgaggacaatccagaagagtatatcagaagagacattgagggctcagatgtagacacaagacgtcgtgcagcctctgaccttgtacgtggattgtgtaaattccatgaacagcgcgtcatagaaatattttctcatcatgtagtggcaatgcttcagcaatatcagttagacagtgagaagaactggaaagctaaagatgctgccatcttccttgtcacgtcactggcttgcaaaaaacaaactgctaagcacgggacaacgcaagccagtgaacttgttaatttacagagctttttcaccgagaacattttgccagaactacagataaaaaatgtcgatgatcatccagtgctgaaggctgactccattaaatatgtgatcatctttagaaacatgctttcccgtgaagtactagttgcctgtctgccgttacttgtcaagcatctgacagccaagagccatgtggttcacagttattcagcaaactgcttggagaaacttttcacactgaagagtcctggtggccaaggaggagttccaatcagcaaggcagaggttcagccattcttagaagagatgttatcaaatctctttaacttgcttttagttccaggctcaacagagaatgaatatgtcatgaaagctattatgaggtcgttctccttgctccaggaggccatgttgccttatgttgctgtgcttatcaataatctggcatctaaactcattcttgtcagcaagaatcccagcaaaccacagtttaaccactatctgtttgaggctatctgttgtgctatcagggtaatatgcaaagctgatgcttctgctgttactggctttgagacaacactgtttcctgtaattcaagagattcttgcaaatgacgtgacagagttcctgccgtatgttttccaagtgttatcattgttgctggaaattcgacaagatattccagagccttacatgaagttgttccctcttcttctgtctccagtcctctgggaaagaaatggaaacatacctcccttggtccgtttgcttcaagcttatattgaaaagggaagcaagattatcattgagtcaaagaaagagatgggactgttaggtgttttccaaaagctgattgcgtcaaagagcaatgaccatgaaggattttatctgctgggaagcatggtggaacactttgagccttctgcattatcaaaacatattcagtctgtgtttatcctactatttcaacggttgcagagctcaaaaactacaaaatttgttaaaggtttgctggtgtttgtgtgtctttatgctgcaaagtatggtggtactgctctgatggagattatagacaccattcaaccaggactttttggaaatattgttgaaaaaattttaatccctgatgtacagaaggtatctgggtcaactgaaaagaggatttgtgctgttggaatgaccaagttacttgctgaatgtccgaaatttctagaaacttacagcaatctttgggtgccattattacaagctttgattggtttgtttgagttacctgaagatgattccattcctgatgacgagcacttcatagaaattgaagacacgccaggttatcagacagcttactcccagctagcatttgccggtaagaaggagagggatccattttctggaacaattcctgatgccaaagtcttccttgcacagtcactacagaagctgtcaacagcacaccctggaaagattaatgcaaagatcaagtctgagctgcatgcagatgctttaggcttcctgcagaagtatcttcaagaagctggcattacactgtga

Transcript

evm.model.Ap3.2442

ATGGCCGACTTAGATGCGAACGCAGTGGCGCTGAATTTGAAAAATACGTTATCACCGGAGGCAAACGTTCGGAAACAAGCTGAGAAGTTCCTTGAATCAGTGGAAGGAAAGCAGAAATACAATGTTCTTCTACTGAACATAGTGGACAATGCGTCTGCAGATGGATTGATTAGAGTTGCTGCGGCGATTGCATTCAAGAACAGTGTGAAACGAAACTGGAGAATTATTCCTGATGAGCCCAACAAGATCAGTGACAGTGATAGAGAAACAATTAAAAGAGAGATTGTTGATCTTATGCTTAGAAGTCCAGAAAAACTACAGAAACAGCTAAGTGATGCTGTCAGTGTGATAGGCCGAGAAGATTTTCCTGATAAGTGGGGAAACTTGTTACCAGAACTCGTAGCCAAGTTTGGCAGTGGAGATTTTCACTTAATCAATGGAGTTCTTCAGACAGCCCACTCATTGTTTAAAAGATATCGTCATGAATTCAAGTCTCAGGAACTGTGGACTGAGATTAAGTTAGTGTTGGATGGTTTTGCACAGCATCTCACAAATCTGTTTGAGGCCATAATGGAAGAAGCCAACAGATGCGGCGGTGACCATGCAAAACTTAAAGACATCCTCAGCTCTATCTTGCTCATCTGCAAAGTGTTCTACAGTTTGAACTTTCAGGACTTGCCTGAACACTTTGAGGAAAACATGGAGAAGTGGATGAAAAACTTTCTCATTCTCCTGACAACAGACAGCAAGCAACTGCAACTAGAGGAGACTGATGAGACTGGACCTTTAGATTTGATCAAATCACAAGTCTGTGACAATGTAGCATTGTATGCTCAAAAATATGACGAAGATTTTGAGAATTACCTGCCAAAGTTTGTGGAAGCTATTTGGCAACTCCTTGTCTCGACAGAAAAACTAGCAAAACATGACATTGTTGTTAGTAATGCTATTGGGTTCCTTGCCTCAGCGTCAGAGAGAAATCACTATAAATACCTGTTTGAAAAACAAGAAACTTTAAAAAGCATATGTGAGAATGTGGTTGTTCCAAACATAGAGTTTAGAGAGGAAGATGAAGAAGTTTTTGAGGACAATCCAGAAGAGTATATCAGAAGAGACATTGAGGGCTCAGATGTAGACACAAGACGTCGTGCAGCCTCTGACCTTGTACGTGGATTGTGTAAATTCCATGAACAGCGCGTCATAGAAATATTTTCTCATCATGTAGTGGCAATGCTTCAGCAATATCAGTTAGACAGTGAGAAGAACTGGAAAGCTAAAGATGCTGCCATCTTCCTTGTCACGTCACTGGCTTGCAAAAAACAAACTGCTAAGCACGGGACAACGCAAGCCAGTGAACTTGTTAATTTACAGAGCTTTTTCACCGAGAACATTTTGCCAGAACTACAGATAAAAAATGTCGATGATCATCCAGTGCTGAAGGCTGACTCCATTAAATATGTGATCATCTTTAGAAACATGCTTTCCCGTGAAGTACTAGTTGCCTGTCTGCCGTTACTTGTCAAGCATCTGACAGCCAAGAGCCATGTGGTTCACAGTTATTCAGCAAACTGCTTGGAGAAACTTTTCACACTGAAGAGTCCTGGTGGCCAAGGAGGAGTTCCAATCAGCAAGGCAGAGGTTCAGCCATTCTTAGAAGAGATGTTATCAAATCTCTTTAACTTGCTTTTAGTTCCAGGCTCAACAGAGAATGAATATGTCATGAAAGCTATTATGAGGTCGTTCTCCTTGCTCCAGGAGGCCATGTTGCCTTATGTTGCTGTGCTTATCAATAATCTGGCATCTAAACTCATTCTTGTCAGCAAGAATCCCAGCAAACCACAGTTTAACCACTATCTGTTTGAGGCTATCTGTTGTGCTATCAGGGTAATATGCAAAGCTGATGCTTCTGCTGTTACTGGCTTTGAGACAACACTGTTTCCTGTAATTCAAGAGATTCTTGCAAATGACGTGACAGAGTTCCTGCCGTATGTTTTCCAAGTGTTATCATTGTTGCTGGAAATTCGACAAGATATTCCAGAGCCTTACATGAAGTTGTTCCCTCTTCTTCTGTCTCCAGTCCTCTGGGAAAGAAATGGAAACATACCTCCCTTGGTCCGTTTGCTTCAAGCTTATATTGAAAAGGGAAGCAAGATTATCATTGAGTCAAAGAAAGAGATGGGACTGTTAGGTGTTTTCCAAAAGCTGATTGCGTCAAAGAGCAATGACCATGAAGGATTTTATCTGCTGGGAAGCATGGTGGAACACTTTGAGCCTTCTGCATTATCAAAACATATTCAGTCTGTGTTTATCCTACTATTTCAACGGTTGCAGAGCTCAAAAACTACAAAATTTGTTAAAGGTTTGCTGGTGTTTGTGTGTCTTTATGCTGCAAAGTATGGTGGTACTGCTCTGATGGAGATTATAGACACCATTCAACCAGGACTTTTTGGAAATATTGTTGAAAAAATTTTAATCCCTGATGTACAGAAGGTATCTGGGTCAACTGAAAAGAGGATTTGTGCTGTTGGAATGACCAAGTTACTTGCTGAATGTCCGAAATTTCTAGAAACTTACAGCAATCTTTGGGTGCCATTATTACAAGCTTTGATTGGTTTGTTTGAGTTACCTGAAGATGATTCCATTCCTGATGACGAGCACTTCATAGAAATTGAAGACACGCCAGGTTATCAGACAGCTTACTCCCAGCTAGCATTTGCCGGTAAGAAGGAGAGGGATCCATTTTCTGGAACAATTCCTGATGCCAAAGTCTTCCTTGCACAGTCACTACAGAAGCTGTCAACAGCACACCCTGGAAAGATTAATGCAAAGATCAAGTCTGAGCTGCATGCAGATGCTTTAGGCTTCCTGCAGAAGTATCTTCAAGAAGCTGGCATTACACTGTGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AY73	Exportin-2 OS=Oreochromis niloticus OX=8128 GN=cse1l PE=2 SV=1
Q9PTU3	Exportin-2 OS=Pagrus major OX=143350 GN=cse1l PE=2 SV=1
Q9ERK4	Exportin-2 OS=Mus musculus OX=10090 GN=Cse1l PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004691 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03378 all species →	CAS_CSE1	CAS/CSE protein, C-terminus	Repeat	Interproscan
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF08506 all species →	Cse1	Cse1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR005043 all species →	Domain	Exportin-2, C-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013713 all species →	Domain	Exportin-2, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10997 all species →	IMPORTIN-7, 8, 11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005049 all species →	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0005635 all species →	Cellular Component	nuclear envelope	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0006611 all species →	Biological Process	protein export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18423	CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter)	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.