Genomic Location: Ap3:26777081...26778391
NR annotation: XP_020613967.1, general transcription factor IIE subunit 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.2468 |
| Transcript |
| evm.model.Ap3.2468 |
| Protein |
| evm.model.Ap3.2468 |
| UniProt accession | Description |
|---|---|
| A6QLI8 | General transcription factor IIE subunit 1 OS=Bos taurus OX=9913 GN=GTF2E1 PE=2 SV=1 |
| P29083 | General transcription factor IIE subunit 1 OS=Homo sapiens OX=9606 GN=GTF2E1 PE=1 SV=2 |
| Q5R8H5 | General transcription factor IIE subunit 1 OS=Pongo abelii OX=9601 GN=GTF2E1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008855 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11521 all species → | TFIIE-A_C | C-terminal general transcription factor TFIIE alpha | Family | Interproscan |
| PF02002 all species → | TFIIE_alpha | TFIIE alpha subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR021600 all species → | Domain | Transcription factor TFIIE alpha subunit, C-terminal | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR017919 all species → | Domain | Transcription factor TFE/TFIIEalpha HTH domain | Interproscan |
| IPR024550 all species → | Domain | TFIIEalpha/SarR/Rpc3 HTH domain | Interproscan |
| IPR039997 all species → | Family | Transcription factor E | Interproscan |
| IPR002853 all species → | Domain | Transcription initiation factor IIE subunit alpha, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13097 all species → | TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0001113 all species → | Biological Process | transcription open complex formation at RNA polymerase II promoter | Interproscan |
| GO:0005673 all species → | Cellular Component | transcription factor TFIIE complex | Interproscan |
| GO:0006367 all species → | Biological Process | transcription initiation at RNA polymerase II promoter | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03136 | TFIIE1, GTF2E1, TFA1, tfe; transcription initiation factor TFIIE subunit alpha | - | Transcription machinery | ko03021 | deepkoala |
Transcript abundance of evm.model.Ap3.2468 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
