Gene detail

Detailed information of evm.model.Ap3.281 in Astrangia poculata

Genomic Location: Ap3:2733642...2745672
NR annotation: KAJ7377264.1, Serine/arginine repetitive matrix protein 2 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.281

atgtacaacaacattggcttgcagacggcccgtggttcgggcacaaatggctatgtacaacggaacttgtctttattgcgtagcagaaaagaaaaagtcgactaccatacgaatgacgacctcgctaaactagaacaaatgaacacgaaaaaacccaatcaagagatcttagagcatgaaaggaaacgacaaattgaactcaagtgtatggaactacaagaccttatggaggaacagggatatactgaaaatgaaattgaaggcaaggtggaggagttgcgacaaatcctggctgaaaaagcaggccttgcatcaaaggacaaagatggaaagcccactgccacagaaacacatcaaatggctgaagcaaatgaacagaagaatgccaaaatgaaagaagctcttggaataaaggaggattacaaagatggctcgtcatttgatcaggaattgaaggcagctcaacgagcttctgcacagttggcttgggaagcgaaacaaaaagatttggaaaagcaaaaagagaaagaactgatcaaaagtgcaaaggaggagtcgtcacccccaaagaagaaaaagagaaagcatacttctgcatctgagtcatcagatgaagggagtaactcagacagttctgacgacgatgctgaaaaggattcttccaagcgtaaaaaacagaaaaaacgaaaagaacggacaccgaaagaaagttcatcggagtcagaaacagacagaagaaaatcaaagaagtcgaaaagagataaggatcaaagaggcgagtctcgtgagcgttcccgcaaaaagagcccagaaagaggtagaaagtccagaagggaagagaaagaagaaaaggaagtcaaacgaaagaagaaatctgtcagctctgaagacgagaaaccgcgaaggaaacgaagacaagattcagaaagtcgatcagagagtgaaagccctgaaagactcaacaagaaaatccaacagaagggtgaaagagatcaaagaaatagaaaagaaaatcgtagtccgtcaactgacagagaaaatatcgcaagacgacgtcgcgaaagatccccttcttcggatagagtatcccctgagaaagcacagcctcgtcgccaacagcagcttgacaaggcagacgtgagagaagaaagagtcatacgggatgatcgtgtaaatcgacgtgacgaagaacgttataggcaggaacgcgtccgtgaagagcgtgaggaacgtgataatggtgcgcgcgaggaacgtgataatcgtgcgcgtgaggaacgtgataatcgtgcgcgttatggtcggtcgcgtgcggaacggaatcactcgcctaatgaccgcatgagcgaagagcgatcaagacctcgtcgaagtgacattcgtgatcggcagtctccggagaatgatgttcgtgacaggcggcaacgtcgtgctgatcgttcgagctcggcagagaagtcacctgatacgaggagccagggaaagcagcgcaaggcgcgaactccgtctgaggaaaaacgaccggtgcgtcgtcaagaacccgctgaagaaaaacctgaaaggagacgtcggagatctagttcaagccctgaacagcctaaaattacagctaggagaagagactcgcgcgaaggagaaggacaacgacgaacacaacagagagaaaacgtttccagggacggcgatagacgtgagggtgggcgaatgaggcgttctgttactcctgaggaaagcaaccgtcgacgtagttcttccaaagaagagagaagggtccgcaaacagcggtctccttcacctgatgataggcgccgcatggaggatacacgaagaagtcgcaagcaagagcagtcccatagtccccctaaggaaaccagaagaatgactgcaacattcgcaccagcatctccaatcagagagagcagacagaaggtgagatcaccgagtgaaacacccgagagtcctccaccgaaaccggctgtgaagaaagcagaagtagctagcgagagaaagcaagtgacaaaaagcaagcaaaaggctgcatccaaaccttccagttcagaggagagttcttccagtagttcgtcggaaaccgagtcagagtctgaaggcaaatcgtccgatagcagccctgagaaaccgacagcacaaacaaaacagcgatcacctcctgaggcgagcgttgaaagagctcgaaagaacaggccttccccttctcctcgtgatgctagacaccagtcctcacctgaagagtcggcaagtcccagtccttctcctgtgaagcaatcgaggcggtccccagaaaacgctgttccttcaaggcgacggaaagctagtaggagcccgagtccaccccctgtgcgtagaaagtctcctccgagccctgttcgtgctagcctaacgaataaaaatcgaagcagaagtagatctggagagagggttaatagaaacagatcacaaagccccaagccagcaagaaatcgaagtcgcagcccgaggcgtgcaccacctgtgcaacctcgtaggcgtcaaccgtccagaagtgcgtcacctctaagatccaacagaatgcccagctcatcgcctccacgaagacaaccatcaagaggctcaaatcagcgccggagaagaagcgacagtcgcagtcccagacgttctccgcctgtccagccccgaaggcgtcaaccatcccggagcccaacgccaccgagagtcaagagaagcccaagccctcctgtcaggagacgccgatcaagaagtccggttcgtgcacgaggctcaaatcagcgtcaaagtagaagccctgtcagaagtccgagtcacagccctaggcgttctccacccaagcaaatgcgaaggcgtcaaccatcaagaagcgtaacgcctccagggaatcgacgtgcagctagcccatctcccagacgacacagccctgtgcagagacgtaacagaactcccagtacatcacctgtccggaagaagagcagagcggcggaacgtgagccttctcctgtccagaagagaagtcaaacctcgagtgggtctgtagagaaaagcactcgtgagcctccaagaagagctgctcaggagaaaaatcaagagaaagctgaagtggtcaagcctaaacaaacgaaaatcaccgaaagcaaatcccggaagaaaagcagcagtcaaagcggaagtagttctgaaagtgacagcagtgagagtgaaagcagcgatgacagtagcagcgagtcgagcagcagtgaggaggagtctgggtccgacagcagcagctctgatgacgacaagccaagacgatag

Transcript

evm.model.Ap3.281

GATAGGAAATTTTCCTGCAAAGCGAATGAAATAGCAAAAATGTACAACAACATTGGCTTGCAGACGGCCCGTGGTTCGGGCACAAATGGCTATGTACAACGGAACTTGTCTTTATTGCGTAGCAGAAAAGAAAAAGTCGACTACCATACGAATGACGACCTCGCTAAACTAGAACAAATGAACACGAAAAAACCCAATCAAGAGATCTTAGAGCATGAAAGGAAACGACAAATTGAACTCAAGTGTATGGAACTACAAGACCTTATGGAGGAACAGGGATATACTGAAAATGAAATTGAAGGCAAGGTGGAGGAGTTGCGACAAATCCTGGCTGAAAAAGCAGGCCTTGCATCAAAGGACAAAGATGGAAAGCCCACTGCCACAGAAACACATCAAATGGCTGAAGCAAATGAACAGAAGAATGCCAAAATGAAAGAAGCTCTTGGAATAAAGGAGGATTACAAAGATGGCTCGTCATTTGATCAGGAATTGAAGGCAGCTCAACGAGCTTCTGCACAGTTGGCTTGGGAAGCGAAACAAAAAGATTTGGAAAAGCAAAAAGAGAAAGAACTGATCAAAAGTGCAAAGGAGGAGTCGTCACCCCCAAAGAAGAAAAAGAGAAAGCATACTTCTGCATCTGAGTCATCAGATGAAGGGAGTAACTCAGACAGTTCTGACGACGATGCTGAAAAGGATTCTTCCAAGCGTAAAAAACAGAAAAAACGAAAAGAACGGACACCGAAAGAAAGTTCATCGGAGTCAGAAACAGACAGAAGAAAATCAAAGAAGTCGAAAAGAGATAAGGATCAAAGAGGCGAGTCTCGTGAGCGTTCCCGCAAAAAGAGCCCAGAAAGAGGTAGAAAGTCCAGAAGGGAAGAGAAAGAAGAAAAGGAAGTCAAACGAAAGAAGAAATCTGTCAGCTCTGAAGACGAGAAACCGCGAAGGAAACGAAGACAAGATTCAGAAAGTCGATCAGAGAGTGAAAGCCCTGAAAGACTCAACAAGAAAATCCAACAGAAGGGTGAAAGAGATCAAAGAAATAGAAAAGAAAATCGTAGTCCGTCAACTGACAGAGAAAATATCGCAAGACGACGTCGCGAAAGATCCCCTTCTTCGGATAGAGTATCCCCTGAGAAAGCACAGCCTCGTCGCCAACAGCAGCTTGACAAGGCAGACGTGAGAGAAGAAAGAGTCATACGGGATGATCGTGTAAATCGACGTGACGAAGAACGTTATAGGCAGGAACGCGTCCGTGAAGAGCGTGAGGAACGTGATAATGGTGCGCGCGAGGAACGTGATAATCGTGCGCGTGAGGAACGTGATAATCGTGCGCGTTATGGTCGGTCGCGTGCGGAACGGAATCACTCGCCTAATGACCGCATGAGCGAAGAGCGATCAAGACCTCGTCGAAGTGACATTCGTGATCGGCAGTCTCCGGAGAATGATGTTCGTGACAGGCGGCAACGTCGTGCTGATCGTTCGAGCTCGGCAGAGAAGTCACCTGATACGAGGAGCCAGGGAAAGCAGCGCAAGGCGCGAACTCCGTCTGAGGAAAAACGACCGGTGCGTCGTCAAGAACCCGCTGAAGAAAAACCTGAAAGGAGACGTCGGAGATCTAGTTCAAGCCCTGAACAGCCTAAAATTACAGCTAGGAGAAGAGACTCGCGCGAAGGAGAAGGACAACGACGAACACAACAGAGAGAAAACGTTTCCAGGGACGGCGATAGACGTGAGGGTGGGCGAATGAGGCGTTCTGTTACTCCTGAGGAAAGCAACCGTCGACGTAGTTCTTCCAAAGAAGAGAGAAGGGTCCGCAAACAGCGGTCTCCTTCACCTGATGATAGGCGCCGCATGGAGGATACACGAAGAAGTCGCAAGCAAGAGCAGTCCCATAGTCCCCCTAAGGAAACCAGAAGAATGACTGCAACATTCGCACCAGCATCTCCAATCAGAGAGAGCAGACAGAAGGTGAGATCACCGAGTGAAACACCCGAGAGTCCTCCACCGAAACCGGCTGTGAAGAAAGCAGAAGTAGCTAGCGAGAGAAAGCAAGTGACAAAAAGCAAGCAAAAGGCTGCATCCAAACCTTCCAGTTCAGAGGAGAGTTCTTCCAGTAGTTCGTCGGAAACCGAGTCAGAGTCTGAAGGCAAATCGTCCGATAGCAGCCCTGAGAAACCGACAGCACAAACAAAACAGCGATCACCTCCTGAGGCGAGCGTTGAAAGAGCTCGAAAGAACAGGCCTTCCCCTTCTCCTCGTGATGCTAGACACCAGTCCTCACCTGAAGAGTCGGCAAGTCCCAGTCCTTCTCCTGTGAAGCAATCGAGGCGGTCCCCAGAAAACGCTGTTCCTTCAAGGCGACGGAAAGCTAGTAGGAGCCCGAGTCCACCCCCTGTGCGTAGAAAGTCTCCTCCGAGCCCTGTTCGTGCTAGCCTAACGAATAAAAATCGAAGCAGAAGTAGATCTGGAGAGAGGGTTAATAGAAACAGATCACAAAGCCCCAAGCCAGCAAGAAATCGAAGTCGCAGCCCGAGGCGTGCACCACCTGTGCAACCTCGTAGGCGTCAACCGTCCAGAAGTGCGTCACCTCTAAGATCCAACAGAATGCCCAGCTCATCGCCTCCACGAAGACAACCATCAAGAGGCTCAAATCAGCGCCGGAGAAGAAGCGACAGTCGCAGTCCCAGACGTTCTCCGCCTGTCCAGCCCCGAAGGCGTCAACCATCCCGGAGCCCAACGCCACCGAGAGTCAAGAGAAGCCCAAGCCCTCCTGTCAGGAGACGCCGATCAAGAAGTCCGGTTCGTGCACGAGGCTCAAATCAGCGTCAAAGTAGAAGCCCTGTCAGAAGTCCGAGTCACAGCCCTAGGCGTTCTCCACCCAAGCAAATGCGAAGGCGTCAACCATCAAGAAGCGTAACGCCTCCAGGGAATCGACGTGCAGCTAGCCCATCTCCCAGACGACACAGCCCTGTGCAGAGACGTAACAGAACTCCCAGTACATCACCTGTCCGGAAGAAGAGCAGAGCGGCGGAACGTGAGCCTTCTCCTGTCCAGAAGAGAAGTCAAACCTCGAGTGGGTCTGTAGAGAAAAGCACTCGTGAGCCTCCAAGAAGAGCTGCTCAGGAGAAAAATCAAGAGAAAGCTGAAGTGGTCAAGCCTAAACAAACGAAAATCACCGAAAGCAAATCCCGGAAGAAAAGCAGCAGTCAAAGCGGAAGTAGTTCTGAAAGTGACAGCAGTGAGAGTGAAAGCAGCGATGACAGTAGCAGCGAGTCGAGCAGCAGTGAGGAGGAGTCTGGGTCCGACAGCAGCAGCTCTGATGACGACAAGCCAAGACGATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BTI8	Serine/arginine repetitive matrix protein 2 OS=Mus musculus OX=10090 GN=Srrm2 PE=1 SV=3
Q9UQ35	Serine/arginine repetitive matrix protein 2 OS=Homo sapiens OX=9606 GN=SRRM2 PE=1 SV=2
Q9U213	SRRM2 protein homolog rsr-2 OS=Caenorhabditis elegans OX=6239 GN=rsr-2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003879 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08312 all species →	cwf21	cwf21 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013170 all species →	Domain	mRNA splicing factor Cwf21 domain	Interproscan
IPR051372 all species →	Family	Pre-mRNA-splicing factor CWC21	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36562 all species →	SERINE/ARGININE REPETITIVE MATRIX 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13172	SRRM2, SRM300; serine/arginine repetitive matrix protein 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.