Gene detail

Detailed information of evm.model.Ap3.372 in Astrangia poculata

Genomic Location: Ap3:3852135...3858489
NR annotation: KXJ21005.1, Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Exaiptasia diaphana]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.372

atggctgaggcagatcaagttcctaacgctgtcggtgctgaagaaattgcagctcaagtgaacccgccagtgcaggcgccggctcaacaaccgggtgaaattcaaccagccgctggggctcaaccggtgttacaagcgaatgagcaagaggatgacatgttacgcgtaatgcggaggctggagactttagagaactcccagaaggcttctgttgagtcagctttagaggaactgcaaagtttcattaagatgcccatgttcagcaaggagaaggccttggattaccttatcaatttgaagattgtggcgaaagagtcgaaacatcccaagtcggggttcttcaacgcggtattgcaggctatgaaggataaaattagggtcccggactctcaattccagcagtatcttcaagtcctattgggcgacaaagatcatgaaaaggttctcgattcgatttctaaagttgataaggctatgcgagtggcagctcctagacccttcgcgcctaggggtcgtgggcgtggtggtcgagcctcgatggtgggtcgtaagagaaaatccgtggtctccaatgaagggattctggaacaagcaagtcactgggtagagtttcggaatcaggttaagggaatcaagccgagaaccaattcgaattgggtggatataaacggggttcctgaccaggagggagtgacggaggtagtacattggaaggacgtgctctcgggcgtggctcctgagttagaagcatttaaattgagagatcccgatcatttttcggttggtggcttacatcaaaacgttggggcgtgggataatgttctcgagagccatcccctagctgatcgtattggcgggtggattcgtgacaaagtggacattctccaatttgctcgacctttctctggcgtctttaagcgagccaggtattcctcagatttgccgccacagaaacggtttccaaaccatgagtcgtgcaggaagttctcggattttatatcgcgagagattattaaccgtgtttctacaggagcgttcagagtttggggggaggttggtgtggatgaccccccttacctggtgcttcctttaacggtggaaccgtccaaaccaagactttgcatcgacgccagatttctgaatctttggatgagagatatgcccttctctctggataaattggcggacgtacccagatttatatacaggggctcgtttatgaccaagtgcgacgacaaatctggctacgaccacgtgctcctttccgagaactcccagacctattttggttttagctttgggggtttatggctggtctgtacgactttgccgtttggatggaagatttcgccctatatttatcacactattggtcttgctgcctcgggcttcctgagagctaaagggatcccttgctctttatatatcgatgaccgtttaaatggcgaacttttgacttccagtggtccttggtcgcagctcccccttaacagatcaagggaatatcgtctacttgcagcaagggcagctttgtttgttgttctctcgattttggtagagctcggctataccattggcataaagaagtccgttttaactccgactacagcactcgagtacctgggtcttgttgtcgattctgaaaaattgtcctttctgatacctgttcgcaagatcgagtctttcgctgctttgagggaggacattcttgcttgtaagtcttgggtggctctcaagaccttgcaacgcttccaggggaagtgtatttctttctcgttagctgtgccaatggcaaagctgtttattagagaaatgagtgccgccattgcgagagctcctgctaatggccaggtacccttgaacgaattccttaaggaggagttggcctattggcgttttttggataattggaaacaatatctcccttggaaagaagaaaaacattacaccgtttctctctctaccgacgcgtctggtcatggttgggcttgtgttttacatcttccatccggcgatcagagctttagagattattggaacccagaccagagagagctttttatatcatctaaggaaatgctggctttggtttatgctatcaaggcgctcccacaagaaattcgtaacgctagacttgacgcctatgttgatagtcaagttatgattggtgcctggaatgcgcagggaagtaagaaatcacctcagctgacgaaagttacaaagcagttgtttttcgctttgtcgtcacgcaacattcaactcaacctgcagtaccttccgtcccgggagaaccaggcagatgcgccttctcgaagactgtcatcccttgatgttaaattgtcggtcgcggcctttgcggcggtggatcaggcatttgggggatcaggcggacactcctttgatttaatggctctcgactcgaatgctcctatgggtaggaatggtattcctctgccgcactttaccccttttcttagcccttgttccgcgggaactctgcctagggtcccgaagttatatactccatctgtagcgtgtcctgtatgcggctacccaaatgacgaacatttcaaattttgccagcaatgtggctatgtgaggcgatctgttggggatcatgctcagtcgcccgcaaagaaatgtaagattgatgaaggcaacattgcagagcgtctacggcaattgtctcagcagcgatcctcttctcgttacgttaaacagaaatcagctttggaacttgagcttggccaattccttgcgagcctgacgacgccaaaatctctttcttctgctcttcctgctgatatcaaagccttccttgtttggaaagatcgcggcgggagaaccaaggtccaccaatcggcttgcccagcagtgtctcaaacagggatgtcttgtgcttgtccaaagagacttgcttttggaacagttgactcgttaattgggaaacttcgtgcaatatttattgaacatggcaggggttcagagtggcattccttacttggtgtggggaacccagcttcttgtcattcagtaaagacttaccttgcagatgttcgagaggaacaacttagggctagaattacgcctcgtcaagcggagccaattattttaagtgatttaagagttatttctggttatttagaaaagatgcttttgaatagctcggtgctgagtgcggtacaagtatttatttatgcgagagatcaagctctctttaaggccttattttttgcgggtgatcgagcagcagatttattgcaagtcaaggtatctgatattttacgttttcccgatgactcaggatttttatttaatcatgtttggacgaaatctttgaggtcaggagatgccaatgtttttgcgtttaaacgaggttccaataaatcagtttgtccagttcggggtctggaaatgtactttaatatttgtaaacttctgggtataaggttgtccccgggcttccttttccgctcggtaactaaatcaaatttggtgggtcctcattgtttagagtcagcggccgctcaggcgagactgaaaatttacacttccttattaagtaaactactatctagcgaccattttactcttcacggctttcgtagtggggcggccgtgtccctagccctcgagggtgtaagcctccacgaaatcatggatcacgtggggtggagaagtagtaaaacggctctacactacatcaagcttaaacaagttgtgaatccggcgggagcggcagcaaaactggcagacttgcccttggaatcaggacagtcatacaaacgtcttaataatttgaagggattttctcaggcctttccgaatgtttag

Transcript

evm.model.Ap3.372

ATGGCTGAGGCAGATCAAGTTCCTAACGCTGTCGGTGCTGAAGAAATTGCAGCTCAAGTGAACCCGCCAGTGCAGGCGCCGGCTCAACAACCGGGTGAAATTCAACCAGCCGCTGGGGCTCAACCGGTGTTACAAGCGAATGAGCAAGAGGATGACATGTTACGCGTAATGCGGAGGCTGGAGACTTTAGAGAACTCCCAGAAGGCTTCTGTTGAGTCAGCTTTAGAGGAACTGCAAAGTTTCATTAAGATGCCCATGTTCAGCAAGGAGAAGGCCTTGGATTACCTTATCAATTTGAAGATTGTGGCGAAAGAGTCGAAACATCCCAAGTCGGGGTTCTTCAACGCGGTATTGCAGGCTATGAAGGATAAAATTAGGGTCCCGGACTCTCAATTCCAGCAGTATCTTCAAGTCCTATTGGGCGACAAAGATCATGAAAAGGTTCTCGATTCGATTTCTAAAGTTGATAAGGCTATGCGAGTGGCAGCTCCTAGACCCTTCGCGCCTAGGGGTCGTGGGCGTGGTGGTCGAGCCTCGATGGTGGGTCGTAAGAGAAAATCCGTGGTCTCCAATGAAGGGATTCTGGAACAAGCAAGTCACTGGGTAGAGTTTCGGAATCAGGTTAAGGGAATCAAGCCGAGAACCAATTCGAATTGGGTGGATATAAACGGGGTTCCTGACCAGGAGGGAGTGACGGAGGTAGTACATTGGAAGGACGTGCTCTCGGGCGTGGCTCCTGAGTTAGAAGCATTTAAATTGAGAGATCCCGATCATTTTTCGGTTGGTGGCTTACATCAAAACGTTGGGGCGTGGGATAATGTTCTCGAGAGCCATCCCCTAGCTGATCGTATTGGCGGGTGGATTCGTGACAAAGTGGACATTCTCCAATTTGCTCGACCTTTCTCTGGCGTCTTTAAGCGAGCCAGGTATTCCTCAGATTTGCCGCCACAGAAACGGTTTCCAAACCATGAGTCGTGCAGGAAGTTCTCGGATTTTATATCGCGAGAGATTATTAACCGTGTTTCTACAGGAGCGTTCAGAGTTTGGGGGGAGGTTGGTGTGGATGACCCCCCTTACCTGGTGCTTCCTTTAACGGTGGAACCGTCCAAACCAAGACTTTGCATCGACGCCAGATTTCTGAATCTTTGGATGAGAGATATGCCCTTCTCTCTGGATAAATTGGCGGACGTACCCAGATTTATATACAGGGGCTCGTTTATGACCAAGTGCGACGACAAATCTGGCTACGACCACGTGCTCCTTTCCGAGAACTCCCAGACCTATTTTGGTTTTAGCTTTGGGGGTTTATGGCTGGTCTGTACGACTTTGCCGTTTGGATGGAAGATTTCGCCCTATATTTATCACACTATTGGTCTTGCTGCCTCGGGCTTCCTGAGAGCTAAAGGGATCCCTTGCTCTTTATATATCGATGACCGTTTAAATGGCGAACTTTTGACTTCCAGTGGTCCTTGGTCGCAGCTCCCCCTTAACAGATCAAGGGAATATCGTCTACTTGCAGCAAGGGCAGCTTTGTTTGTTGTTCTCTCGATTTTGGTAGAGCTCGGCTATACCATTGGCATAAAGAAGTCCGTTTTAACTCCGACTACAGCACTCGAGTACCTGGGTCTTGTTGTCGATTCTGAAAAATTGTCCTTTCTGATACCTGTTCGCAAGATCGAGTCTTTCGCTGCTTTGAGGGAGGACATTCTTGCTTGTAAGTCTTGGGTGGCTCTCAAGACCTTGCAACGCTTCCAGGGGAAGTGTATTTCTTTCTCGTTAGCTGTGCCAATGGCAAAGCTGTTTATTAGAGAAATGAGTGCCGCCATTGCGAGAGCTCCTGCTAATGGCCAGGTACCCTTGAACGAATTCCTTAAGGAGGAGTTGGCCTATTGGCGTTTTTTGGATAATTGGAAACAATATCTCCCTTGGAAAGAAGAAAAACATTACACCGTTTCTCTCTCTACCGACGCGTCTGGTCATGGTTGGGCTTGTGTTTTACATCTTCCATCCGGCGATCAGAGCTTTAGAGATTATTGGAACCCAGACCAGAGAGAGCTTTTTATATCATCTAAGGAAATGCTGGCTTTGGTTTATGCTATCAAGGCGCTCCCACAAGAAATTCGTAACGCTAGACTTGACGCCTATGTTGATAGTCAAGTTATGATTGGTGCCTGGAATGCGCAGGGAAGTAAGAAATCACCTCAGCTGACGAAAGTTACAAAGCAGTTGTTTTTCGCTTTGTCGTCACGCAACATTCAACTCAACCTGCAGTACCTTCCGTCCCGGGAGAACCAGGCAGATGCGCCTTCTCGAAGACTGTCATCCCTTGATGTTAAATTGTCGGTCGCGGCCTTTGCGGCGGTGGATCAGGCATTTGGGGGATCAGGCGGACACTCCTTTGATTTAATGGCTCTCGACTCGAATGCTCCTATGGGTAGGAATGGTATTCCTCTGCCGCACTTTACCCCTTTTCTTAGCCCTTGTTCCGCGGGAACTCTGCCTAGGGTCCCGAAGTTATATACTCCATCTGTAGCGTGTCCTGTATGCGGCTACCCAAATGACGAACATTTCAAATTTTGCCAGCAATGTGGCTATGTGAGGCGATCTGTTGGGGATCATGCTCAGTCGCCCGCAAAGAAATGTAAGATTGATGAAGGCAACATTGCAGAGCGTCTACGGCAATTGTCTCAGCAGCGATCCTCTTCTCGTTACGTTAAACAGAAATCAGCTTTGGAACTTGAGCTTGGCCAATTCCTTGCGAGCCTGACGACGCCAAAATCTCTTTCTTCTGCTCTTCCTGCTGATATCAAAGCCTTCCTTGTTTGGAAAGATCGCGGCGGGAGAACCAAGGTCCACCAATCGGCTTGCCCAGCAGTGTCTCAAACAGGGATGTCTTGTGCTTGTCCAAAGAGACTTGCTTTTGGAACAGTTGACTCGTTAATTGGGAAACTTCGTGCAATATTTATTGAACATGGCAGGGGTTCAGAGTGGCATTCCTTACTTGGTGTGGGGAACCCAGCTTCTTGTCATTCAGTAAAGACTTACCTTGCAGATGTTCGAGAGGAACAACTTAGGGCTAGAATTACGCCTCGTCAAGCGGAGCCAATTATTTTAAGTGATTTAAGAGTTATTTCTGGTTATTTAGAAAAGATGCTTTTGAATAGCTCGGTGCTGAGTGCGGTACAAGTATTTATTTATGCGAGAGATCAAGCTCTCTTTAAGGCCTTATTTTTTGCGGGTGATCGAGCAGCAGATTTATTGCAAGTCAAGGTATCTGATATTTTACGTTTTCCCGATGACTCAGGATTTTTATTTAATCATGTTTGGACGAAATCTTTGAGGTCAGGAGATGCCAATGTTTTTGCGTTTAAACGAGGTTCCAATAAATCAGTTTGTCCAGTTCGGGGTCTGGAAATGTACTTTAATATTTGTAAACTTCTGGGTATAAGGTTGTCCCCGGGCTTCCTTTTCCGCTCGGTAACTAAATCAAATTTGGTGGGTCCTCATTGTTTAGAGTCAGCGGCCGCTCAGGCGAGACTGAAAATTTACACTTCCTTATTAAGTAAACTACTATCTAGCGACCATTTTACTCTTCACGGCTTTCGTAGTGGGGCGGCCGTGTCCCTAGCCCTCGAGGGTGTAAGCCTCCACGAAATCATGGATCACGTGGGGTGGAGAAGTAGTAAAACGGCTCTACACTACATCAAGCTTAAACAAGTTGTGAATCCGGCGGGAGCGGCAGCAAAACTGGCAGACTTGCCCTTGGAATCAGGACAGTCATACAAACGTCTTAATAATTTGAAGGGATTTTCTCAGGCCTTTCCGAATGTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7XDD0	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1
Q9LW68	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1
Q9FGH2	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana OX=3702 GN=LSH5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000203 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF04852 all species →	ALOG_dom	ALOG domain	Domain	Interproscan
PF00589 all species →	Phage_integrase	Phage integrase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR006936 all species →	Domain	ALOG domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR002104 all species →	Domain	Integrase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.372.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.