Genomic Location: Ap3:5602205...5610243
NR annotation: XP_020608671.1, uncharacterized protein LOC110047264 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.541 |
| Transcript |
| evm.model.Ap3.541 |
| Protein |
| evm.model.Ap3.541 |
| UniProt accession | Description |
|---|---|
| Q9NUX5 | Protection of telomeres protein 1 OS=Homo sapiens OX=9606 GN=POT1 PE=1 SV=1 |
| Q95K48 | Protection of telomeres protein 1 OS=Macaca fascicularis OX=9541 GN=POT1 PE=2 SV=1 |
| P62597 | Protection of telomeres protein 1 OS=Gallus gallus OX=9031 GN=POT1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002243 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16686 all species → | POT1PC | ssDNA-binding domain of telomere protection protein | Domain | Interproscan |
| PF02765 all species → | POT1 | Telomeric single stranded DNA binding POT1/CDC13 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR011564 all species → | Domain | Telomeric single stranded DNA binding POT1/Cdc13 | Interproscan |
| IPR032042 all species → | Domain | Protection of telomeres protein 1, ssDNA-binding domain | Interproscan |
| IPR028389 all species → | Family | Protection of telomeres protein 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14513 all species → | PROTECTION OF TELOMERES 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000723 all species → | Biological Process | telomere maintenance | Interproscan |
| GO:0000781 all species → | Cellular Component | chromosome, telomeric region | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0043047 all species → | Molecular Function | single-stranded telomeric DNA binding | Interproscan |
| GO:0000783 all species → | Cellular Component | nuclear telomere cap complex | Interproscan |
| GO:0010521 all species → | Molecular Function | telomerase inhibitor activity | Interproscan |
| GO:0016233 all species → | Biological Process | telomere capping | Interproscan |
| GO:0032210 all species → | Biological Process | regulation of telomere maintenance via telomerase | Interproscan |
| GO:0051974 all species → | Biological Process | obsolete negative regulation of telomerase activity | Interproscan |
| GO:0098505 all species → | Molecular Function | G-rich strand telomeric DNA binding | Interproscan |
evm.model.Ap3.541.Transcript abundance of evm.model.Ap3.541 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
