Gene detail

Detailed information of evm.model.Ap3.602 in Astrangia poculata

Genomic Location: Ap3:6290625...6309789
NR annotation: XP_020613799.1, neurofibromin-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.602

ccatccacagttgtaaagctgttaacagttgtacctgatggtgcggtgaaaaatctccaggcggcgtacttgtacaactgcagtagtacattgagacagtatgctaagtataacgaacgccatctctctccactcaagggccgttctgtggtgcgagtgtgtgagtcgctgagtaaactgcatgagtatatcagtcctggtgaattgaagctgccaagctccactgtgaccctggaggaagacttgaaggtttttcacgcttttagagtgtcaacgagaagcaacgttttagtcaaggttggccctacatcagttcagatcaccactccagaaaggcatagagtgctgggttattctagcattctaaacgatgtgtactatgcttccgaagttaaaggggccacagtggaagacgagaacctctgtctgctaaagcttgcgaatgtcggtccaggaattcttctgatgagcaatgacagcgagcagattgtacaagctgtcacgcatgtcaaaaccaggtggcagctctcacaacccgattcatccacaaccacaagtaaaaagatcaaacccaaagacgtccctggaacgctactcaacatggctttgttgaatcttggtacttcagatcccagtcttcgtctagctgcctacaatctcctgtgttctgtgaccaagtcatttaacctgaaaatcgaggaacggctgttggaaggaacaggtttgtgcatccctgcaaacaacacgctgtttattgttggaatcagtgagaaacttgcggctaaagaacctcaactcactcttgagttcctagaagagtgcatcgcaggttttgtaaaatcagatttcgaactcaagcatttgtgtttagagtacatggcgccatggctaccaaatctagcaaggttttgtagattccccgccgatgatccacagaaggtgaaaatgactcgcattcttgaagaactgattaacttgactgtgaaggaaaaggggaccatgtacccttcagttcaggccacaatctggggcaatgtggggaaagtcaccgagttgctggacacagttctcgactgcttcatcaaggccagtgctacaggaggtcttgggtctgtcaaggcagaagttatggccgacactgctgttgctttggcgtccgctaacgttcaagttgtgtcacgcaaggtcatcggaaggcttgactcactcatcagcaagaccttcatttctcccactgtccgccttgaagctcacctcatgtgggacgacatagctatcctcacaagatatcttcttatgctttcctttaacgattgtcttgatgttgccagtcatatcccttacttgtttcatctcgtcacacttctcgtctcaactggtcctccaaccatccgcgcctcaatccacggactggttatcaacattatccagtcactctgtacctgctcctgtatcaagtttagtgatgaaactcaaaaacttcttcgcatgcggctggcagaactctcgtcgccaaagttttatcttctctttggcatctcaaagataaagactccagctgttaaagctttcaaagcgacctaccaaggcaggtacacactgagagactgtgaaggagagccactgagcatgactgcaatggagacgatcactgacctactgctggaaataatggagagttgcatgaaggacttaccagaatgtacgtggctcaagaaatggacagagctggcgtcaaatttcgcgtttgactttaaccctgcacttcagcctcgttccatagtagttcttggttgtatctgcaaagaagcggacgacaggcttgtacagaaagtcttacaagtgttgattatggcactgagttcatataatgaccttgtgttggtggaagcagcgttcatgtgcctctcaagacttcaggtgattcttaacaaggattccatgtttcacaaggcatttttctggatcgctgttgcggtgcttcagttgtcagaggtcttactttatccttgtggcctggcactagtggaacagagtcttattacacttgaaacacacggcgccttcgaaacagagccggtggacaaagtgctcatggcggtacgagaagaacctctgctggagtttcactgtaaacaaatggatcatttcgtcggtcttcaattttctcagaacttccattttgcgctgatggtgcacctcataaaaggagtgtatcatccccaggccacctcgtctgcgcgagctattcgcatcctgaacttgatgcataatatcacaagcaaacgaaagacaagtcgtggttcctttgcagtcaacaaggaaaatctcgcatatttagctgcgttattgcccgtgtcagaggaagttcgttccaatctacgcccaggtgacaaaaaggaacccgacagccccaccctaccctatccaggaaaactggacagtagtagcatcgccggaagttcaacctcgttaaatacggaacaccaagtgtccattgttattaccactgatgaaaatcctggcgaccaggcctttgcttggcccgcggaatgtcagaacatgctcttggacccagggattgtgaacgacactcagacccaggctctgctactgaccacgctggcaattttgctagagcacatcaccggggatttagagtcaagatatttatatgaggttctcgccgaggccagcttggtgtttccaggagtattccctgttatttataatttattggattcggatctctccattgtgcttggtcattcggacgatgtacccacactgaaggcgatacagaccatagtgcactctatgagtgctgtgaaacaaaatgaggatcctctcatcaaggccagttatctgtcaacgttcggattttcaggattcagccattttacaaagttcaaggaacagagtggccaagcaaatcgtgcgcaactgttcgtaaagttcttggaagcagttgtggaagtgtacggtgtacccatgacggagcaaaaaactcatcgttcaggatccgtcgcttcaatcaaaccactggtacacagctccagcacagaagacgtaagggttgcggcttcgtcttcgtctctttcgtcttcccttagctctctgtccggtgcggcagccgggaagaacctgttcattccactgccgttcaagcgcgcgagctcgtcttaccggcaaaaaaagagcgagaaagaatcgccgaaatttcgacggaactggtcggcgagaggaccgaggagtacctcagctggaaaaattgtgaagctatag

Transcript

evm.model.Ap3.602

CCATCCACAGTTGTAAAGCTGTTAACAGTTGTACCTGATGGTGCGGTGAAAAATCTCCAGGCGGCGTACTTGTACAACTGCAGTAGTACATTGAGACAGTATGCTAAGTATAACGAACGCCATCTCTCTCCACTCAAGGGCCGTTCTGTGGTGCGAGTGTGTGAGTCGCTGAGTAAACTGCATGAGTATATCAGTCCTGGTGAATTGAAGCTGCCAAGCTCCACTGTGACCCTGGAGGAAGACTTGAAGGTTTTTCACGCTTTTAGAGTGTCAACGAGAAGCAACGTTTTAGTCAAGGTTGGCCCTACATCAGTTCAGATCACCACTCCAGAAAGGCATAGAGTGCTGGGTTATTCTAGCATTCTAAACGATGTGTACTATGCTTCCGAAGTTAAAGGGGCCACAGTGGAAGACGAGAACCTCTGTCTGCTAAAGCTTGCGAATGTCGGTCCAGGAATTCTTCTGATGAGCAATGACAGCGAGCAGATTGTACAAGCTGTCACGCATGTCAAAACCAGGTGGCAGCTCTCACAACCCGATTCATCCACAACCACAAGTAAAAAGATCAAACCCAAAGACGTCCCTGGAACGCTACTCAACATGGCTTTGTTGAATCTTGGTACTTCAGATCCCAGTCTTCGTCTAGCTGCCTACAATCTCCTGTGTTCTGTGACCAAGTCATTTAACCTGAAAATCGAGGAACGGCTGTTGGAAGGAACAGGTTTGTGCATCCCTGCAAACAACACGCTGTTTATTGTTGGAATCAGTGAGAAACTTGCGGCTAAAGAACCTCAACTCACTCTTGAGTTCCTAGAAGAGTGCATCGCAGGTTTTGTAAAATCAGATTTCGAACTCAAGCATTTGTGTTTAGAGTACATGGCGCCATGGCTACCAAATCTAGCAAGGTTTTGTAGATTCCCCGCCGATGATCCACAGAAGGTGAAAATGACTCGCATTCTTGAAGAACTGATTAACTTGACTGTGAAGGAAAAGGGGACCATGTACCCTTCAGTTCAGGCCACAATCTGGGGCAATGTGGGGAAAGTCACCGAGTTGCTGGACACAGTTCTCGACTGCTTCATCAAGGCCAGTGCTACAGGAGGTCTTGGGTCTGTCAAGGCAGAAGTTATGGCCGACACTGCTGTTGCTTTGGCGTCCGCTAACGTTCAAGTTGTGTCACGCAAGGTCATCGGAAGGCTTGACTCACTCATCAGCAAGACCTTCATTTCTCCCACTGTCCGCCTTGAAGCTCACCTCATGTGGGACGACATAGCTATCCTCACAAGATATCTTCTTATGCTTTCCTTTAACGATTGTCTTGATGTTGCCAGTCATATCCCTTACTTGTTTCATCTCGTCACACTTCTCGTCTCAACTGGTCCTCCAACCATCCGCGCCTCAATCCACGGACTGGTTATCAACATTATCCAGTCACTCTGTACCTGCTCCTGTATCAAGTTTAGTGATGAAACTCAAAAACTTCTTCGCATGCGGCTGGCAGAACTCTCGTCGCCAAAGTTTTATCTTCTCTTTGGCATCTCAAAGATAAAGACTCCAGCTGTTAAAGCTTTCAAAGCGACCTACCAAGGCAGGTACACACTGAGAGACTGTGAAGGAGAGCCACTGAGCATGACTGCAATGGAGACGATCACTGACCTACTGCTGGAAATAATGGAGAGTTGCATGAAGGACTTACCAGAATGTACGTGGCTCAAGAAATGGACAGAGCTGGCGTCAAATTTCGCGTTTGACTTTAACCCTGCACTTCAGCCTCGTTCCATAGTAGTTCTTGGTTGTATCTGCAAAGAAGCGGACGACAGGCTTGTACAGAAAGTCTTACAAGTGTTGATTATGGCACTGAGTTCATATAATGACCTTGTGTTGGTGGAAGCAGCGTTCATGTGCCTCTCAAGACTTCAGGTGATTCTTAACAAGGATTCCATGTTTCACAAGGCATTTTTCTGGATCGCTGTTGCGGTGCTTCAGTTGTCAGAGGTCTTACTTTATCCTTGTGGCCTGGCACTAGTGGAACAGAGTCTTATTACACTTGAAACACACGGCGCCTTCGAAACAGAGCCGGTGGACAAAGTGCTCATGGCGGTACGAGAAGAACCTCTGCTGGAGTTTCACTGTAAACAAATGGATCATTTCGTCGGTCTTCAATTTTCTCAGAACTTCCATTTTGCGCTGATGGTGCACCTCATAAAAGGAGTGTATCATCCCCAGGCCACCTCGTCTGCGCGAGCTATTCGCATCCTGAACTTGATGCATAATATCACAAGCAAACGAAAGACAAGTCGTGGTTCCTTTGCAGTCAACAAGGAAAATCTCGCATATTTAGCTGCGTTATTGCCCGTGTCAGAGGAAGTTCGTTCCAATCTACGCCCAGGTGACAAAAAGGAACCCGACAGCCCCACCCTACCCTATCCAGGAAAACTGGACAGTAGTAGCATCGCCGGAAGTTCAACCTCGTTAAATACGGAACACCAAGTGTCCATTGTTATTACCACTGATGAAAATCCTGGCGACCAGGCCTTTGCTTGGCCCGCGGAATGTCAGAACATGCTCTTGGACCCAGGGATTGTGAACGACACTCAGACCCAGGCTCTGCTACTGACCACGCTGGCAATTTTGCTAGAGCACATCACCGGGGATTTAGAGTCAAGATATTTATATGAGGTTCTCGCCGAGGCCAGCTTGGTGTTTCCAGGAGTATTCCCTGTTATTTATAATTTATTGGATTCGGATCTCTCCATTGTGCTTGGTCATTCGGACGATGTACCCACACTGAAGGCGATACAGACCATAGTGCACTCTATGAGTGCTGTGAAACAAAATGAGGATCCTCTCATCAAGGCCAGTTATCTGTCAACGTTCGGATTTTCAGGATTCAGCCATTTTACAAAGTTCAAGGAACAGAGTGGCCAAGCAAATCGTGCGCAACTGTTCGTAAAGTTCTTGGAAGCAGTTGTGGAAGTGTACGGTGTACCCATGACGGAGCAAAAAACTCATCGTTCAGGATCCGTCGCTTCAATCAAACCACTGGTACACAGCTCCAGCACAGAAGACGTAAGGGTTGCGGCTTCGTCTTCGTCTCTTTCGTCTTCCCTTAGCTCTCTGTCCGGTGCGGCAGCCGGGAAGAACCTGTTCATTCCACTGCCGTTCAAGCGCGCGAGCTCGTCTTACCGGCAAAAAAAGAGCGAGAAAGAATCGCCGAAATTTCGACGGAACTGGTCGGCGAGAGGACCGAGGAGTACCTCAGCTGGAAAAATTGTGAAGCTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97526	Neurofibromin OS=Rattus norvegicus OX=10116 GN=Nf1 PE=1 SV=1
P21359	Neurofibromin OS=Homo sapiens OX=9606 GN=NF1 PE=1 SV=2
Q04690	Neurofibromin OS=Mus musculus OX=10090 GN=Nf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002451 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13716 all species →	CRAL_TRIO_2	Divergent CRAL/TRIO domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR004405 all species →	Family	Translation release factor pelota	Interproscan
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10853 all species →	PELOTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032790 all species →	Biological Process	ribosome disassembly	Interproscan
GO:0070481 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, non-stop decay	Interproscan
GO:0070651 all species →	Biological Process	nonfunctional rRNA decay	Interproscan
GO:0070966 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, no-go decay	Interproscan
GO:0071025 all species →	Biological Process	RNA surveillance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.602.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.