Genomic Location: Ap3:6440411...6445058
NR annotation: KAJ7378727.1, hypothetical protein OS493_021309 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.614 |
| Transcript |
| evm.model.Ap3.614 |
| Protein |
| evm.model.Ap3.614 |
| UniProt accession | Description |
|---|---|
| Q8N0X4 | Citramalyl-CoA lyase, mitochondrial OS=Homo sapiens OX=9606 GN=CLYBL PE=1 SV=2 |
| Q8R4N0 | Citramalyl-CoA lyase, mitochondrial OS=Mus musculus OX=10090 GN=Clybl PE=1 SV=2 |
| Q5I0K3 | Citramalyl-CoA lyase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Clybl PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006120 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03328 all species → | HpcH_HpaI | HpcH/HpaI aldolase/citrate lyase family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040442 all species → | Homologous_superfamily | Pyruvate kinase-like domain superfamily | Interproscan |
| IPR040186 all species → | Family | Citramalyl-CoA lyase | Interproscan |
| IPR011206 all species → | Family | Citrate lyase beta subunit-like | Interproscan |
| IPR005000 all species → | Domain | HpcH/HpaI aldolase/citrate lyase domain | Interproscan |
| IPR015813 all species → | Homologous_superfamily | Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11105 all species → | CITRATE LYASE SUBUNIT BETA-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0047777 all species → | Molecular Function | (S)-citramalyl-CoA lyase activity | Interproscan |
| GO:0106064 all species → | Biological Process | regulation of cobalamin metabolic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
evm.model.Ap3.614.Transcript abundance of evm.model.Ap3.614 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
