Genomic Location: Ap3:6571333...6585725
NR annotation: XP_020613706.1, BRCA1-associated protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.626 |
| Transcript |
| evm.model.Ap3.626 |
| Protein |
| evm.model.Ap3.626 |
| UniProt accession | Description |
|---|---|
| Q7Z569 | BRCA1-associated protein OS=Homo sapiens OX=9606 GN=BRAP PE=1 SV=2 |
| Q99MP8 | BRCA1-associated protein OS=Mus musculus OX=10090 GN=Brap PE=1 SV=1 |
| Q95QN6 | BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans OX=6239 GN=brap-2 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003383 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Ubiquitin family | UBD|ZnF|ZnF_UBP · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13639 all species → | zf-RING_2 | Ring finger domain | Domain | Interproscan |
| PF02148 all species → | zf-UBP | Zn-finger in ubiquitin-hydrolases and other protein | Domain | Interproscan |
| PF07576 all species → | BRAP2 | BRCA1-associated protein 2 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR034932 all species → | Domain | BRAP2, RNA recognition motif | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR001607 all species → | Domain | Zinc finger, UBP-type | Interproscan |
| IPR011422 all species → | Domain | BRCA1-associated 2/ETP1, RRM | Interproscan |
| IPR047243 all species → | Domain | BRCA1-associated protein, RING finger, H2 subclass | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24007 all species → | BRCA1-ASSOCIATED PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0007265 all species → | Biological Process | Ras protein signal transduction | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10632 | BRAP; BRCA1-associated protein | EC:2.3.2.27 | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of evm.model.Ap3.626 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
