Detailed information of evm.model.Ap3.653 in Astrangia poculata

Genomic Location: Ap3:6868549...6877723
NR annotation: XP_020613521.1, tetratricopeptide repeat protein 28-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5EA11Tetratricopeptide repeat protein 4 OS=Bos taurus OX=9913 GN=TTC4 PE=2 SV=2
O95801Tetratricopeptide repeat protein 4 OS=Homo sapiens OX=9606 GN=TTC4 PE=1 SV=3
Q8R3H9Tetratricopeptide repeat protein 4 OS=Mus musculus OX=10090 GN=Ttc4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000515 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07719
all species →		TPR_2Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan
IPR013105
all species →		RepeatTetratricopeptide repeat 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46035
all species →		TETRATRICOPEPTIDE REPEAT PROTEIN 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006457
all species →		Biological Processprotein foldingInterproscan
GO:0030544
all species →		Molecular FunctionHsp70 protein bindingInterproscan
GO:0051879
all species →		Molecular FunctionHsp90 protein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.653.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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