Gene detail

Detailed information of evm.model.Ap3.835 in Astrangia poculata

Genomic Location: Ap3:8965324...8977808
NR annotation: XP_022808497.1, poly(A)-specific ribonuclease PNLDC1-like isoform X2 [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2RXZ1	Poly(A)-specific ribonuclease PNLDC1 OS=Mus musculus OX=10090 GN=Pnldc1 PE=1 SV=1
Q5R6R6	Poly(A)-specific ribonuclease PNLDC1 OS=Pongo abelii OX=9601 GN=PNLDC1 PE=2 SV=1
Q8NA58	Poly(A)-specific ribonuclease PNLDC1 OS=Homo sapiens OX=9606 GN=PNLDC1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001811 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04857 all species →	CAF1	CAF1 family ribonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051181 all species →	Family	CAF1 family poly(A)-specific ribonucleases	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR006941 all species →	Family	Ribonuclease CAF1	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15092 all species →	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004535 all species →	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01148	PARN, PNLDC1; poly(A)-specific ribonuclease	EC:3.1.13.4	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.