Detailed information of evm.model.Ap3.836 in Astrangia poculata

Genomic Location: Ap3:8977963...8980973
NR annotation: XP_020632366.1, poly(A)-specific ribonuclease PNLDC1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001811 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08675
all species →		RNA_bindRNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012677
all species →		Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR014789
all species →		DomainPoly(A)-specific ribonuclease, RNA-bindingInterproscan

 PANTHER
No PANTHER signature was detected for evm.model.Ap3.836. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0004535
all species →		Molecular Functionpoly(A)-specific ribonuclease activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006402
all species →		Biological ProcessmRNA catabolic processInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K07498K07498; putative transposase-Replication and repair-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP