Gene detail

Detailed information of evm.model.Ap3.858 in Astrangia poculata

Genomic Location: Ap3:9238844...9252361
NR annotation: CAH3020197.1, unnamed protein product, partial [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.858

atgtgctattcactggatgatgaagagagagaaaatgaagggaaaaagtttgtaaaagaagctcttgatctcagggaggagaggttaaaacttgttgcaaaagacagagaacctccccctccttatccacctgtcaaggctctgacatcacacactgtagagaaaagtgatataagttttgaggtgaagacaggcgtaagacagggttgcgtgatgtctgcattgctattcaacttagctatcgattgggtaatgcatcgtactacggaagaccatcccaggggcatcaggtggaccctcttctccaccttagaggatctagattttgcggatgatttagctctgctttctcatacccatagccacatgcaagagaagaccagccttttaagcaaatacgctcaccaggtgggactgaacatcagcctcaccaaaactgaggtcatgaccctaaacaactctaaccctcagcccgtcaaggtgaatggaaaagaccgcccaatgaccgagcagtttaaatatctgggcagcattgtcaggcaagatggtggtgcaggcatagatatccagagccggctgaacaaagccagaaacaccttcaggatgctgagcaatgtgtggcggttatcacagtacagtacacataccaagctcaagatctatcaaagctgtgtcctgtctacccttttgtatgggtcagaatgttggcgaatgttagaaagtgatctagagaagctgtcaaccttccataccaaaagtctgcgaaaaatacttcgcatcttctggcctcaaacaatttccaacaaggatctgcttttgcggtgcaaacaggaggacatgggtactattattatgcaacggcgctggaggtggattggccatgtcatccgaaaggaaaacgaatccatcacaaagacagcactatactggacacccgaaggaaagcgcaagcgtggcaggcccaagaatacatggcgacgtacagtagagacagaattgaggggcttaaaccaaagctggaacaccatccaacagctggccaaagacagacagcagtggaggacctttgttgctgccctatgtgccagtgggcacaatgggcagtgggcaagtcttggtgattgtttcattgctctctatgatcacctcacatcatcagacaatcctcagccacttggccgaagagttgatcttgaagaatactacaaagctattgtcgcaccagacatttccatgtcctatagagcctctgttgttaaagtgccagattattcaagctcaagtttttctactgaaggcttttcagtgtacaagaatgtgcaaacaggggacagtgatgaaaaaagtaaaagaggaccaaaaagaaagaaaccacctccaagtacaattgatgattttcttcccaagagaagatcagcaagggtgagaacaaacaaaaagaaggaggaggaaataaactacaaggagttggttcagtcattcattccctctctgttcagacccagtgtgagtgcagatgatgacagtagtcaggacagtcttggagatggatcgcagtttagtcaaagaagtagccagtcccaaacttcagaagggaaacctggtgaaggcttcttcactggtgcagacagaaacacttacgatgaaattactggtgaggctgaaacactggacattcttacctttgtcaaagaacagaaggaaaatgggggaatcgttgacttgatgaaccagtatgggatatctcttgcagctcaaaccaacaagaagtggcctccaaccttggcagatgtcttcctaaaagtctaccagagaatgagaaagcatgttattctgccatctgaattttgcagtgatgatgaagatgcgttgtacaggacaagaatggcaaagcttgtactagtagccagtgagctgactttggacaaactgctgacggccaagtcaaagtcctcatcaagcctatctcctgccagctcaccacgaggtggtggatcagtcgtatcgcccttgagaggcagtggtttttccagtcagtatctggccacagatattgagtaccttcatcgtataagctgtgatcaaactattcatggagactacacccttgaaatggctattagagtgaactggatgagagcaaggtacctgatgttacaaggtcaaatggattatgccatgatgtacttagataggactccagatgagaattgcaaggtgtattttgcacaccaactaggcgcgctactttggtctttagcagcacttaatggatcactactggcaaagacaaacaaagccgttttgcctaagctgctggataaaaatgttccagtgttgccctcttcaccactttctacctttgttatcattgatgccatggctgtgattcaggcaatgacgtatgtgccagacaatttcagtgcatatagtgctagtagctga

Transcript

evm.model.Ap3.858

ATGTGCTATTCACTGGATGATGAAGAGAGAGAAAATGAAGGGAAAAAGTTTGTAAAAGAAGCTCTTGATCTCAGGGAGGAGAGGTTAAAACTTGTTGCAAAAGACAGAGAACCTCCCCCTCCTTATCCACCTGTCAAGGCTCTGACATCACACACTGTAGAGAAAAGTGATATAAGTTTTGAGGTGAAGACAGGCGTAAGACAGGGTTGCGTGATGTCTGCATTGCTATTCAACTTAGCTATCGATTGGGTAATGCATCGTACTACGGAAGACCATCCCAGGGGCATCAGGTGGACCCTCTTCTCCACCTTAGAGGATCTAGATTTTGCGGATGATTTAGCTCTGCTTTCTCATACCCATAGCCACATGCAAGAGAAGACCAGCCTTTTAAGCAAATACGCTCACCAGGTGGGACTGAACATCAGCCTCACCAAAACTGAGGTCATGACCCTAAACAACTCTAACCCTCAGCCCGTCAAGGTGAATGGAAAAGACCGCCCAATGACCGAGCAGTTTAAATATCTGGGCAGCATTGTCAGGCAAGATGGTGGTGCAGGCATAGATATCCAGAGCCGGCTGAACAAAGCCAGAAACACCTTCAGGATGCTGAGCAATGTGTGGCGGTTATCACAGTACAGTACACATACCAAGCTCAAGATCTATCAAAGCTGTGTCCTGTCTACCCTTTTGTATGGGTCAGAATGTTGGCGAATGTTAGAAAGTGATCTAGAGAAGCTGTCAACCTTCCATACCAAAAGTCTGCGAAAAATACTTCGCATCTTCTGGCCTCAAACAATTTCCAACAAGGATCTGCTTTTGCGGTGCAAACAGGAGGACATGGGTACTATTATTATGCAACGGCGCTGGAGGTGGATTGGCCATGTCATCCGAAAGGAAAACGAATCCATCACAAAGACAGCACTATACTGGACACCCGAAGGAAAGCGCAAGCGTGGCAGGCCCAAGAATACATGGCGACGTACAGTAGAGACAGAATTGAGGGGCTTAAACCAAAGCTGGAACACCATCCAACAGCTGGCCAAAGACAGACAGCAGTGGAGGACCTTTGTTGCTGCCCTATGTGCCAGTGGGCACAATGGGCAGTGGGCAAGTCTTGGTGATTGTTTCATTGCTCTCTATGATCACCTCACATCATCAGACAATCCTCAGCCACTTGGCCGAAGAGTTGATCTTGAAGAATACTACAAAGCTATTGTCGCACCAGACATTTCCATGTCCTATAGAGCCTCTGTTGTTAAAGTGCCAGATTATTCAAGCTCAAGTTTTTCTACTGAAGGCTTTTCAGTGTACAAGAATGTGCAAACAGGGGACAGTGATGAAAAAAGTAAAAGAGGACCAAAAAGAAAGAAACCACCTCCAAGTACAATTGATGATTTTCTTCCCAAGAGAAGATCAGCAAGGGTGAGAACAAACAAAAAGAAGGAGGAGGAAATAAACTACAAGGAGTTGGTTCAGTCATTCATTCCCTCTCTGTTCAGACCCAGTGTGAGTGCAGATGATGACAGTAGTCAGGACAGTCTTGGAGATGGATCGCAGTTTAGTCAAAGAAGTAGCCAGTCCCAAACTTCAGAAGGGAAACCTGGTGAAGGCTTCTTCACTGGTGCAGACAGAAACACTTACGATGAAATTACTGGTGAGGCTGAAACACTGGACATTCTTACCTTTGTCAAAGAACAGAAGGAAAATGGGGGAATCGTTGACTTGATGAACCAGTATGGGATATCTCTTGCAGCTCAAACCAACAAGAAGTGGCCTCCAACCTTGGCAGATGTCTTCCTAAAAGTCTACCAGAGAATGAGAAAGCATGTTATTCTGCCATCTGAATTTTGCAGTGATGATGAAGATGCGTTGTACAGGACAAGAATGGCAAAGCTTGTACTAGTAGCCAGTGAGCTGACTTTGGACAAACTGCTGACGGCCAAGTCAAAGTCCTCATCAAGCCTATCTCCTGCCAGCTCACCACGAGGTGGTGGATCAGTCGTATCGCCCTTGAGAGGCAGTGGTTTTTCCAGTCAGTATCTGGCCACAGATATTGAGTACCTTCATCGTATAAGCTGTGATCAAACTATTCATGGAGACTACACCCTTGAAATGGCTATTAGAGTGAACTGGATGAGAGCAAGGTACCTGATGTTACAAGGTCAAATGGATTATGCCATGATGTACTTAGATAGGACTCCAGATGAGAATTGCAAGGTGTATTTTGCACACCAACTAGGCGCGCTACTTTGGTCTTTAGCAGCACTTAATGGATCACTACTGGCAAAGACAAACAAAGCCGTTTTGCCTAAGCTGCTGGATAAAAATGTTCCAGTGTTGCCCTCTTCACCACTTTCTACCTTTGTTATCATTGATGCCATGGCTGTGATTCAGGCAATGACGTATGTGCCAGACAATTTCAGTGCATATAGTGCTAGTAGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y6J0	Calcineurin-binding protein cabin-1 OS=Homo sapiens OX=9606 GN=CABIN1 PE=1 SV=1
O88480	Calcineurin-binding protein cabin-1 OS=Rattus norvegicus OX=10116 GN=Cabin1 PE=1 SV=1
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002204 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR033053 all species →	Family	Histone transcription regulator 3/CABIN1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15502 all species →	CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.858.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.