Genomic Location: Ap3:9485339...9496795
NR annotation: KAJ7387279.1, Breast carcinoma amplified sequence 3 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.882 |
| Transcript |
| evm.model.Ap3.882 |
| Protein |
| evm.model.Ap3.882 |
| UniProt accession | Description |
|---|---|
| Q8CCN5 | BCAS3 microtubule associated cell migration factor OS=Mus musculus OX=10090 GN=Bcas3 PE=1 SV=2 |
| Q9H6U6 | BCAS3 microtubule associated cell migration factor OS=Homo sapiens OX=9606 GN=BCAS3 PE=1 SV=3 |
| Q8SY41 | Breast carcinoma-amplified sequence 3 homolog OS=Drosophila melanogaster OX=7227 GN=rudhira PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008907 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12490 all species → | BCAS3 | BCAS3 microtubule associated cell migration factor, C-terminal | Domain | Interproscan |
| PF21034 all species → | BCAS3_WD40 | BCAS3, WD40 repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022175 all species → | Domain | BCAS3 domain | Interproscan |
| IPR048382 all species → | Domain | BCAS3, WD40 domain | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR045142 all species → | Family | BCAS3-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13268 all species → | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006914 all species → | Biological Process | autophagy | Interproscan |
| GO:0042594 all species → | Biological Process | response to starvation | Interproscan |
evm.model.Ap3.882.Transcript abundance of evm.model.Ap3.882 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
