Gene detail

Detailed information of evm.model.Ap3.89 in Astrangia poculata

Genomic Location: Ap3:846058...852189
NR annotation: XP_020619676.1, uncharacterized protein LOC110057432 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.89

atgtcaagaaacgggaagattcatccggcggtcagtagtgattacgctcatcgccgtgatgttatggagatgaacagagtgaatcacgtagcgaagtcaaggaaagtatcgacggataactggcaaaaaatgactaaagaagtcatggcagtttcaaaatggaaagattacattcgttccatgaggggatctcagaaggaaaactcttccggactgaataacaccagagtggggctgtactcacgatcaggttcggttaaggaaagagaaacgacttgtgtactggatagcgatgtggaggatttaggacatgaaaggatagctatgtacgatacgaatgcgtatatgaaacccatgccagcagtgaattcaggagaacctattcatcctgcactcgcagctagcagagcgatgattatctacttcgccaagctagcaagagcaagtctagagcaggaacaagagcttgatttcgactttgttgagggtcttattggagaaggcgccgatattaactttactgatcggcacgggcagaccgtgctgcacgaagtcgctcgcatctggcacgtggatgttgccaggtttattttggaaaacggcggtgacgtgaaccagaaggatgagtatggacgcacaccactacaccttgctgcagcagttgattaccctgaaatggtggagtttctagtcagcaacaaagctgaccttcatgcatgtacatcaggagagcatcaaacacccacacactatgcagctaagaatgatgcagctaaagctctcaaggttcttctaaagctgggtgggaggatatatgatagagactacaaagatcgaactcctttgcaagttgcagctgagttagatcggtccgagacagccaaatatttaatagaccaaggcgctcctgcaggtgtacaggactgtgcaggcagctcagtgatgtctttcatgatctccaagatgcctccagtggctaaagaagctttagaccagttccacagcacagaccgaggaaaccgtagacagtacttctacctcaaccatttggagcctgccctgcctaacgataaaggcgagtatgattcgtgtgtcagatctcctctacactgcgtcgtgcattataaacaaatggacattattatgcatccggtgtttaaacgactgcttgatgtgaagtgggaacgatttggttggcgcggaacagttaagaatatctgcatacacgcgttttttgtgctactttggacggcacttggggttacgcttcatgtcggagacgctgattattacaacccacctaatgtctactggtggcgcattgttttagagactttggcgtgtttgatgactttgtactttatttgcttggaattctttgagatcggtgcatcgaaaaaggcgcatcaaaagtggaagagttggagaatcagtgagattgatagagaccttcagttctgtcacccgcgatggccggaggagagaaaataccttgaaatggaacggagagaggtcgttgattctggaatttcttacttcaatgattcgtggaattattttgactgggtaacatacggctggattctcggcataatagtgactcggctttttgcagttgtacttgacaatgacgtggcacgctcgctgcaccccaaagtgtttgcgatcgcgttgattttcatttggcttcgactgatgaaagtcttccgtggctttaccacattagggccattcattgtcatgatcggacatatcattgacgatactctcaagtttggatttctttattttgaaatttacgtaccgtatgtctgtgcgttctggatcatatttggaggcaaaaagaacgctgagatcatgagagaaaatgagcaagacagcagtggctgggagaactttaacgacctcatgtactcggtgtggcagttgacagtcgtagggaattatccctgggattccctgctcgtagtggatcgactcatggctcaaattctctgtggaacttacttagggttgtcagctattgtgatgttaaatctgttcattgctctcatgtctgacacgtttcagcgtgtttatgataacgccaaggcgaacgcggccatgcagcgtgcaagcatgatcctgaacatggaggagaacatgggtgataagagtcgagagagacaaagaagatacattcatgaaaaactcgctccagaggaaatgtactacgatgatgactccacgcagccaggctctgggactctagagcgcatgactcatcagatcaaagacgtcgttgatgaggtttacgaaatgctgcaaggaaagagcaatggatcgggcaagactgacaagaacctggggcgagaaattgaaagattacgaaatgacctcgcagaagtatccaatcgccatgagcagactgtaaaagaaatgagaaacgaagtggcagaaatgaaaggtctgttaattcgagttttacagcacggctccgttccatcactaccctccgtgagatctcttcaagatcaacatcagtccccggagcatctaaccacaaacgaaacacgaactccttcaaaacgatcggcgagcaatcggtcgcgccgaaagaaacatcggcgacaacccagctacccgagtgacgacgaagttgatcacgtgaattaccagggattaccactcgccgatgatactgaaggcgagtcaaatgagttgcccagtgttcgagtgctggtttcacgagctgcgagtagcaaaaagaatagagaagatcacgatcacacttga

Transcript

evm.model.Ap3.89

ATGTCAAGAAACGGGAAGATTCATCCGGCGGTCAGTAGTGATTACGCTCATCGCCGTGATGTTATGGAGATGAACAGAGTGAATCACGTAGCGAAGTCAAGGAAAGTATCGACGGATAACTGGCAAAAAATGACTAAAGAAGTCATGGCAGTTTCAAAATGGAAAGATTACATTCGTTCCATGAGGGGATCTCAGAAGGAAAACTCTTCCGGACTGAATAACACCAGAGTGGGGCTGTACTCACGATCAGGTTCGGTTAAGGAAAGAGAAACGACTTGTGTACTGGATAGCGATGTGGAGGATTTAGGACATGAAAGGATAGCTATGTACGATACGAATGCGTATATGAAACCCATGCCAGCAGTGAATTCAGGAGAACCTATTCATCCTGCACTCGCAGCTAGCAGAGCGATGATTATCTACTTCGCCAAGCTAGCAAGAGCAAGTCTAGAGCAGGAACAAGAGCTTGATTTCGACTTTGTTGAGGGTCTTATTGGAGAAGGCGCCGATATTAACTTTACTGATCGGCACGGGCAGACCGTGCTGCACGAAGTCGCTCGCATCTGGCACGTGGATGTTGCCAGGTTTATTTTGGAAAACGGCGGTGACGTGAACCAGAAGGATGAGTATGGACGCACACCACTACACCTTGCTGCAGCAGTTGATTACCCTGAAATGGTGGAGTTTCTAGTCAGCAACAAAGCTGACCTTCATGCATGTACATCAGGAGAGCATCAAACACCCACACACTATGCAGCTAAGAATGATGCAGCTAAAGCTCTCAAGGTTCTTCTAAAGCTGGGTGGGAGGATATATGATAGAGACTACAAAGATCGAACTCCTTTGCAAGTTGCAGCTGAGTTAGATCGGTCCGAGACAGCCAAATATTTAATAGACCAAGGCGCTCCTGCAGGTGTACAGGACTGTGCAGGCAGCTCAGTGATGTCTTTCATGATCTCCAAGATGCCTCCAGTGGCTAAAGAAGCTTTAGACCAGTTCCACAGCACAGACCGAGGAAACCGTAGACAGTACTTCTACCTCAACCATTTGGAGCCTGCCCTGCCTAACGATAAAGGCGAGTATGATTCGTGTGTCAGATCTCCTCTACACTGCGTCGTGCATTATAAACAAATGGACATTATTATGCATCCGGTGTTTAAACGACTGCTTGATGTGAAGTGGGAACGATTTGGTTGGCGCGGAACAGTTAAGAATATCTGCATACACGCGTTTTTTGTGCTACTTTGGACGGCACTTGGGGTTACGCTTCATGTCGGAGACGCTGATTATTACAACCCACCTAATGTCTACTGGTGGCGCATTGTTTTAGAGACTTTGGCGTGTTTGATGACTTTGTACTTTATTTGCTTGGAATTCTTTGAGATCGGTGCATCGAAAAAGGCGCATCAAAAGTGGAAGAGTTGGAGAATCAGTGAGATTGATAGAGACCTTCAGTTCTGTCACCCGCGATGGCCGGAGGAGAGAAAATACCTTGAAATGGAACGGAGAGAGGTCGTTGATTCTGGAATTTCTTACTTCAATGATTCGTGGAATTATTTTGACTGGGTAACATACGGCTGGATTCTCGGCATAATAGTGACTCGGCTTTTTGCAGTTGTACTTGACAATGACGTGGCACGCTCGCTGCACCCCAAAGTGTTTGCGATCGCGTTGATTTTCATTTGGCTTCGACTGATGAAAGTCTTCCGTGGCTTTACCACATTAGGGCCATTCATTGTCATGATCGGACATATCATTGACGATACTCTCAAGTTTGGATTTCTTTATTTTGAAATTTACGTACCGTATGTCTGTGCGTTCTGGATCATATTTGGAGGCAAAAAGAACGCTGAGATCATGAGAGAAAATGAGCAAGACAGCAGTGGCTGGGAGAACTTTAACGACCTCATGTACTCGGTGTGGCAGTTGACAGTCGTAGGGAATTATCCCTGGGATTCCCTGCTCGTAGTGGATCGACTCATGGCTCAAATTCTCTGTGGAACTTACTTAGGGTTGTCAGCTATTGTGATGTTAAATCTGTTCATTGCTCTCATGTCTGACACGTTTCAGCGTGTTTATGATAACGCCAAGGCGAACGCGGCCATGCAGCGTGCAAGCATGATCCTGAACATGGAGGAGAACATGGGTGATAAGAGTCGAGAGAGACAAAGAAGATACATTCATGAAAAACTCGCTCCAGAGGAAATGTACTACGATGATGACTCCACGCAGCCAGGCTCTGGGACTCTAGAGCGCATGACTCATCAGATCAAAGACGTCGTTGATGAGGTTTACGAAATGCTGCAAGGAAAGAGCAATGGATCGGGCAAGACTGACAAGAACCTGGGGCGAGAAATTGAAAGATTACGAAATGACCTCGCAGAAGTATCCAATCGCCATGAGCAGACTGTAAAAGAAATGAGAAACGAAGTGGCAGAAATGAAAGGTCTGTTAATTCGAGTTTTACAGCACGGCTCCGTTCCATCACTACCCTCCGTGAGATCTCTTCAAGATCAACATCAGTCCCCGGAGCATCTAACCACAAACGAAACACGAACTCCTTCAAAACGATCGGCGAGCAATCGGTCGCGCCGAAAGAAACATCGGCGACAACCCAGCTACCCGAGTGACGACGAAGTTGATCACGTGAATTACCAGGGATTACCACTCGCCGATGATACTGAAGGCGAGTCAAATGAGTTGCCCAGTGTTCGAGTGCTGGTTTCACGAGCTGCGAGTAGCAAAAAGAATAGAGAAGATCACGATCACACTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QUQ5	Short transient receptor potential channel 4 OS=Mus musculus OX=10090 GN=Trpc4 PE=1 SV=1
P79100	Short transient receptor potential channel 4 OS=Bos taurus OX=9913 GN=TRPC4 PE=2 SV=2
Q9UBN4	Short transient receptor potential channel 4 OS=Homo sapiens OX=9606 GN=TRPC4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000428 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR024862 all species →	Family	Transient receptor potential cation channel subfamily V	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10582 all species →	TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0098703 all species →	Biological Process	calcium ion import across plasma membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.89.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.