Gene detail

Detailed information of evm.model.Ap3.946 in Astrangia poculata

Genomic Location: Ap3:10438499...10448353
NR annotation: XP_020628986.1, protein retinal degeneration B-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.946

atggcggcaatggaggaaggaaaaatcgacgtcgtggttaaactcaaacaagaacagcacgtggctagtgtcaacagcggcttcactgcagtctccagtagctttccactgagcgccatttctctcatggtctcttcttcgccattttatgacgaggcagtgaattccatggtagttgccactaacatggtttatcgagagtttctcaggtctaacgaagggcaaggctttcggggagaggtctgtcttcttggcgactgtatgggtgccctgctcgcgtacgatgccctgacgtccagcgtgaactccttgcgaagccgcacacagagttgtatctcaaacatagcaatgctttccccaaacgccgcctcatccacgcctcaacacaccacagagacgaacggcggcttgccaagaaaaccccggcgcacaagtagccacacaccaccgagtaaaagcaacctggagaactcgcacaaccttcggctcagtctaagcagcgggaatatccgagaaaacgtcgacccagagagagatgagatgataacttcgctgccggtcgaagagacggaagataacgtgatgatttcaccgcgtcctcttagcaaggcagccaaattgcatacgtttagtttcgacactatgtcgctgtccgtggattccgtggatcacgtgatgtttgattttgaagtgtgcaagtttttcgcgtttggttcgccgattggactcgtgttggcttatcgcaggttcttgaacggggaggatagagggaatctagctgtaccaccaaaacctgcttgtaagaagttttacaacctgtttcacccgtttgacccgtctgcgtcccgaatcgaacctttgatcatgagccagttcggtcagatcccggctgtaagcgtgcctcgatatcaccggtttccattaggagatggtcaatcacatctccttagcaacgtcatcggtgcgtacccagagttgtttgttaaccaatcacctttgaaccctgttacccagtcccgcccgggcctggttaaaagaggggacagcagtctgagcaccgcaagtcaggtgtccagtgatagttctggaggcacagacttggattttgcaacccagaactggtggggtaccaaacgtgtggactatgctctctattgtcccgagggacttcaacagtttcccacagctgtcctctcgcctctcttccatgtcagctactgggagtccagtgacgtggctgcttttgtcgtcagacagattcttcatggtgagtgggacatttcaagtgctttgtctcccaataaaagatgccaaacatttagtccttcggaacccagagagaaatggttaaaacgaagaactgccatcaaaattaagaacttaaacgccaatcatagagctaacgatcgggttatacttgaaggtcttgaccagtctctcacggccaggttcatgtatggacctcttgacatggtgtctctaagtcacgagaaggtggatatttacgtcatgacccaacccccctcgggtgagtacgttttatttgacaccacggtcaccggaagtggaggaaaattatcgtgtaacattcctgaagaaaagaaacttccggtcggaatttaccctgtcaagttggtcgtcagaggcgaccatacgtgggtagacagtaacctggccgttttaccgcccaagacagaggctgttgtattcagtatcgacggctcatttgcggccagcgtttccattcgtggcaaagacccgaaagtccgcgcaggcgccgtggatgtcgtaaggcactggcaagagttaggattcctgatcgtttacgtcacaagtcggcctgactttcaaaagatgaaagtcatggcttggttggcggagcataacttcccttatgggcttgttacgtttggaaatggaatctcgaaagatcttcagagacataaaaccgagtttcttcgataccttgtcaacgattgtcaagtgctaatccacgcagcttacggatcagtgaaagacatatcagtgtatgcgtccgttggagttgagtcgcatcagatatacactgtgggaaaacaccatccaaggaaatacgcaaaacaagctcagttcctaaaagatggctatgcagctcatctaaccgcgctctccactcaaacaatctccagacctgctgtggggaattctcgtttgatccttaggcgtggttgttttggtcttccaacacgtgcgtcgaagacaagacacaagatcaaacgttccatttccgacaaactctcgcccgattctgataaagagtgttcgactaccctatcgggatcttttaattactcttcttttagacacacgaaggggcgatctgtgagtaagtttgatgaataa

Transcript

evm.model.Ap3.946

ATGGCGGCAATGGAGGAAGGAAAAATCGACGTCGTGGTTAAACTCAAACAAGAACAGCACGTGGCTAGTGTCAACAGCGGCTTCACTGCAGTCTCCAGTAGCTTTCCACTGAGCGCCATTTCTCTCATGGTCTCTTCTTCGCCATTTTATGACGAGGCAGTGAATTCCATGGTAGTTGCCACTAACATGGTTTATCGAGAGTTTCTCAGGTCTAACGAAGGGCAAGGCTTTCGGGGAGAGGTCTGTCTTCTTGGCGACTGTATGGGTGCCCTGCTCGCGTACGATGCCCTGACGTCCAGCGTGAACTCCTTGCGAAGCCGCACACAGAGTTGTATCTCAAACATAGCAATGCTTTCCCCAAACGCCGCCTCATCCACGCCTCAACACACCACAGAGACGAACGGCGGCTTGCCAAGAAAACCCCGGCGCACAAGTAGCCACACACCACCGAGTAAAAGCAACCTGGAGAACTCGCACAACCTTCGGCTCAGTCTAAGCAGCGGGAATATCCGAGAAAACGTCGACCCAGAGAGAGATGAGATGATAACTTCGCTGCCGGTCGAAGAGACGGAAGATAACGTGATGATTTCACCGCGTCCTCTTAGCAAGGCAGCCAAATTGCATACGTTTAGTTTCGACACTATGTCGCTGTCCGTGGATTCCGTGGATCACGTGATGTTTGATTTTGAAGTGTGCAAGTTTTTCGCGTTTGGTTCGCCGATTGGACTCGTGTTGGCTTATCGCAGGTTCTTGAACGGGGAGGATAGAGGGAATCTAGCTGTACCACCAAAACCTGCTTGTAAGAAGTTTTACAACCTGTTTCACCCGTTTGACCCGTCTGCGTCCCGAATCGAACCTTTGATCATGAGCCAGTTCGGTCAGATCCCGGCTGTAAGCGTGCCTCGATATCACCGGTTTCCATTAGGAGATGGTCAATCACATCTCCTTAGCAACGTCATCGGTGCGTACCCAGAGTTGTTTGTTAACCAATCACCTTTGAACCCTGTTACCCAGTCCCGCCCGGGCCTGGTTAAAAGAGGGGACAGCAGTCTGAGCACCGCAAGTCAGGTGTCCAGTGATAGTTCTGGAGGCACAGACTTGGATTTTGCAACCCAGAACTGGTGGGGTACCAAACGTGTGGACTATGCTCTCTATTGTCCCGAGGGACTTCAACAGTTTCCCACAGCTGTCCTCTCGCCTCTCTTCCATGTCAGCTACTGGGAGTCCAGTGACGTGGCTGCTTTTGTCGTCAGACAGATTCTTCATGGTGAGTGGGACATTTCAAGTGCTTTGTCTCCCAATAAAAGATGCCAAACATTTAGTCCTTCGGAACCCAGAGAGAAATGGTTAAAACGAAGAACTGCCATCAAAATTAAGAACTTAAACGCCAATCATAGAGCTAACGATCGGGTTATACTTGAAGGTCTTGACCAGTCTCTCACGGCCAGGTTCATGTATGGACCTCTTGACATGGTGTCTCTAAGTCACGAGAAGGTGGATATTTACGTCATGACCCAACCCCCCTCGGGTGAGTACGTTTTATTTGACACCACGGTCACCGGAAGTGGAGGAAAATTATCGTGTAACATTCCTGAAGAAAAGAAACTTCCGGTCGGAATTTACCCTGTCAAGTTGGTCGTCAGAGGCGACCATACGTGGGTAGACAGTAACCTGGCCGTTTTACCGCCCAAGACAGAGGCTGTTGTATTCAGTATCGACGGCTCATTTGCGGCCAGCGTTTCCATTCGTGGCAAAGACCCGAAAGTCCGCGCAGGCGCCGTGGATGTCGTAAGGCACTGGCAAGAGTTAGGATTCCTGATCGTTTACGTCACAAGTCGGCCTGACTTTCAAAAGATGAAAGTCATGGCTTGGTTGGCGGAGCATAACTTCCCTTATGGGCTTGTTACGTTTGGAAATGGAATCTCGAAAGATCTTCAGAGACATAAAACCGAGTTTCTTCGATACCTTGTCAACGATTGTCAAGTGCTAATCCACGCAGCTTACGGATCAGTGAAAGACATATCAGTGTATGCGTCCGTTGGAGTTGAGTCGCATCAGATATACACTGTGGGAAAACACCATCCAAGGAAATACGCAAAACAAGCTCAGTTCCTAAAAGATGGCTATGCAGCTCATCTAACCGCGCTCTCCACTCAAACAATCTCCAGACCTGCTGTGGGGAATTCTCGTTTGATCCTTAGGCGTGGTTGTTTTGGTCTTCCAACACGTGCGTCGAAGACAAGACACAAGATCAAACGTTCCATTTCCGACAAACTCTCGCCCGATTCTGATAAAGAGTGTTCGACTACCCTATCGGGATCTTTTAATTACTCTTCTTTTAGACACACGAAGGGGCGATCTGTGAGTAAGTTTGATGAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BZ71	Membrane-associated phosphatidylinositol transfer protein 3 OS=Homo sapiens OX=9606 GN=PITPNM3 PE=1 SV=2
P43125	Protein retinal degeneration B OS=Drosophila melanogaster OX=7227 GN=rdgB PE=1 SV=2
Q3UHE1	Membrane-associated phosphatidylinositol transfer protein 3 OS=Mus musculus OX=10090 GN=Pitpnm3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004721 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02862 all species →	DDHD	DDHD domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031315 all species →	Domain	LNS2/PITP	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR004177 all species →	Domain	DDHD domain	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23509 all species →	PA-PL1 PHOSPHOLIPASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030134 all species →	Cellular Component	COPII-coated ER to Golgi transport vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24069	PITPNM; membrane-associated phosphatidylinositol transfer protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.