Gene detail

Detailed information of evm.model.Ap3.991 in Astrangia poculata

Genomic Location: Ap3:10955527...10958436
NR annotation: XP_020629836.1, derlin-2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BNI4	Derlin-2 OS=Mus musculus OX=10090 GN=Derl2 PE=1 SV=2
Q9GZP9	Derlin-2 OS=Homo sapiens OX=9606 GN=DERL2 PE=1 SV=1
Q5RC74	Derlin-2 OS=Pongo abelii OX=9601 GN=DERL2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006729 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04511 all species →	DER1	Der1-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007599 all species →	Family	Derlin	Interproscan
IPR035952 all species →	Homologous_superfamily	Rhomboid-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11009 all species →	DER1-LIKE PROTEIN, DERLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000839 all species →	Cellular Component	Hrd1p ubiquitin ligase ERAD-L complex	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0051787 all species →	Molecular Function	misfolded protein binding	Interproscan
GO:1990381 all species →	Molecular Function	ubiquitin-specific protease binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13989	DERL2_3; Derlin-2/3	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.