Gene detail

Detailed information of evm.model.Ap4.1133 in Astrangia poculata

Genomic Location: Ap4:11741468...11752334
NR annotation: XP_020620340.1, neuralized-like protein 4 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.1133

atgggtgtcgaacagtctatacctctccaccagagacgcatgcaagcaagtccaattaactctctgtttgagcgggctgttattgacgctcttcgtgaaatagccgaggaatcgagtgtgccatctgaacagattgagcatgcgtgggatcccgaagattgctctccgaggttccgagttttgagtgacaggttgacagctagaagacttccctctcctcttactacagatgccataagaggaaagaaagggtacagacagggtcgacacgtgtgggaaataacctgggaacgagaccagcgaggttcacacgcagtcattggaatcgctcttcctcaggccccgctacagtgcctcggttacattccactgatagggtccaattccgaatcgtggggctggaatataagcaagaaggtgtcatttcatgctgggaaggagactccatacccaacaaatgatcctggattctttgtccctgatactgtgtattgtatactgaacatggatgatggcactctgagttttgccacagaagatacttaccttggagtagcgtttcgtaatcttccccgtcatccactgaagcctctgtgcccatgcgcaagcgcagtgtatggaaactgtaatattaaaatgaagtatatgggacgaggagacgactttctaaccaagttacaagcattaaaagagaaagtgccacgctccgtccaatcccctacagtcaggtccccgccacaatcacccggagccaaatcaccgccccagtccccgacgtctcctacccagctctcaactgcctccagcggcccagtgaagtcttcagagtcgtacaagtttcatcacagttgcggagacaacatcgccgtgatgcttgctgggaagaaggccaagagaattgacgctttgcagcattttaatcatggcgtcgttttaacaagccaacctttacaagttgatgaactatttgaagttcgtttggatagcaaagtaccaaaatggtatggaagtcttgatattggagccacgagcgtttctcctgaaaacatggagttcccttcaactttgacgtctattgcacaaggaacaacgtttgcactcagtggcaataaaatcctgaacaacggaaaagagatgactacgatatctaaagacttggacgatctatcggttggtgaccgagttggagtcatgcgcatgtcagacaattctttgcatttctttataaatggcttagatgttggcaaaaagattaaaactatcccgtcagtactttatggcgttgtggatgtattcggccaggccgaggaagtaactataactggtggtcaagcggaaacccagaacagtaaccaggacgaagtcgattctgtgtcagttatggtgcgtatgaacaacaccgtaaacatcctaaaggaaggcacattcaccgatatgctgtccgttattggaaaagtagccaaagatattttagagccttactcggagacagatgacaggcagcttcgacagaagtacggtgaccacttatccgacatcggtgcgccgcgttacctgactacacttcttcgccgcctgatggatatggggatagagacacgggaaggttgggtggggatgtacgtgattcgcagtgtgttctggaactacgctgacgccagtttgaaaatggcccgagatttgggacgtagtgggtcgctgaagattatgctgaatgatctggacacatgtggaacaggcagctccaagaacgagaaaaagaaattcctggtgtcttccgctatcaacatcctacacaattgttcaaaggccgcagaaaaccgccagattctctgtgacctacgagcaaaggaaaggattgctccatttctgaagtcagatgacatggaggtggttgtgtcggccttattgacacttgcgtacatcacctcagatgagcagaaaaagctgctggaagccgagagcagggtaataagctacctcattggcatgttgcgtaatgcactgggtcaatcggacttacgaggcagatcggatggtaccacgtggtcggctcaagaaatcgcagatggcttgggtaacctggtagtcaatgaaaagaacatggaggtcatgctggacagagatatcgttcctctgatgatatcacttatcgctaaaggcggtcccactgaaaaagaaggcgctgccaacaccttgtggaatattgcaaagacttctaaaggaaaggcaaagatcaaggaaactgcgaacgcagtggaagaactgacacgtttaagcaaaagtggtaaccagtcagttcaagaggcagcaaagcgagttcttctcgagctaaaagaaaccgcaagaactaccagaggtaccgcaaatgtagaacggagaacacgttgtgattatcaggagaaatgccgcaaattcaaagcatccctaaagctggcagatattttctttgacccaaaatttgacagatgtttctgtacagagtgtcacgcagctcgaggggacaatctttactacactcgaggaaaacccgcgaaggattacgggattccaataggatggtgccggtttgggctcaaggtccatcacagagctaccgccctagacgtgtttaacaaatggcacgtggcattccatggcacaagagtggacagcgtaaatgcgatcttggaatgcggcgatcttcttatcccaggtgatgtcgcgctcggaggaagaaagttaagcgaagaggttggacattataatgatgacagaaaaccaaaaggatttgacaccaagcagatctttgtatcaccgagtgttcgatactctggacacaactgttatgcaaagtccaaaagctttcaagacccgtcaacaaacgagacctatacttccaaagccgttcttcagttgtgtatcaacccagacagttaccaagttgggcctcagacaattggtgctacagatgagatcgacccgaagtttagcaatcaggagattgaatggtctacaaaggaacgtggatccattattctttatggattgttagttaaacttgatgaagccaactga

Transcript

evm.model.Ap4.1133

ATGGGTGTCGAACAGTCTATACCTCTCCACCAGAGACGCATGCAAGCAAGTCCAATTAACTCTCTGTTTGAGCGGGCTGTTATTGACGCTCTTCGTGAAATAGCCGAGGAATCGAGTGTGCCATCTGAACAGATTGAGCATGCGTGGGATCCCGAAGATTGCTCTCCGAGGTTCCGAGTTTTGAGTGACAGGTTGACAGCTAGAAGACTTCCCTCTCCTCTTACTACAGATGCCATAAGAGGAAAGAAAGGGTACAGACAGGGTCGACACGTGTGGGAAATAACCTGGGAACGAGACCAGCGAGGTTCACACGCAGTCATTGGAATCGCTCTTCCTCAGGCCCCGCTACAGTGCCTCGGTTACATTCCACTGATAGGGTCCAATTCCGAATCGTGGGGCTGGAATATAAGCAAGAAGGTGTCATTTCATGCTGGGAAGGAGACTCCATACCCAACAAATGATCCTGGATTCTTTGTCCCTGATACTGTGTATTGTATACTGAACATGGATGATGGCACTCTGAGTTTTGCCACAGAAGATACTTACCTTGGAGTAGCGTTTCGTAATCTTCCCCGTCATCCACTGAAGCCTCTGTGCCCATGCGCAAGCGCAGTGTATGGAAACTGTAATATTAAAATGAAGTATATGGGACGAGGAGACGACTTTCTAACCAAGTTACAAGCATTAAAAGAGAAAGTGCCACGCTCCGTCCAATCCCCTACAGTCAGGTCCCCGCCACAATCACCCGGAGCCAAATCACCGCCCCAGTCCCCGACGTCTCCTACCCAGCTCTCAACTGCCTCCAGCGGCCCAGTGAAGTCTTCAGAGTCGTACAAGTTTCATCACAGTTGCGGAGACAACATCGCCGTGATGCTTGCTGGGAAGAAGGCCAAGAGAATTGACGCTTTGCAGCATTTTAATCATGGCGTCGTTTTAACAAGCCAACCTTTACAAGTTGATGAACTATTTGAAGTTCGTTTGGATAGCAAAGTACCAAAATGGTATGGAAGTCTTGATATTGGAGCCACGAGCGTTTCTCCTGAAAACATGGAGTTCCCTTCAACTTTGACGTCTATTGCACAAGGAACAACGTTTGCACTCAGTGGCAATAAAATCCTGAACAACGGAAAAGAGATGACTACGATATCTAAAGACTTGGACGATCTATCGGTTGGTGACCGAGTTGGAGTCATGCGCATGTCAGACAATTCTTTGCATTTCTTTATAAATGGCTTAGATGTTGGCAAAAAGATTAAAACTATCCCGTCAGTACTTTATGGCGTTGTGGATGTATTCGGCCAGGCCGAGGAAGTAACTATAACTGGTGGTCAAGCGGAAACCCAGAACAGTAACCAGGACGAAGTCGATTCTGTGTCAGTTATGGTGCGTATGAACAACACCGTAAACATCCTAAAGGAAGGCACATTCACCGATATGCTGTCCGTTATTGGAAAAGTAGCCAAAGATATTTTAGAGCCTTACTCGGAGACAGATGACAGGCAGCTTCGACAGAAGTACGGTGACCACTTATCCGACATCGGTGCGCCGCGTTACCTGACTACACTTCTTCGCCGCCTGATGGATATGGGGATAGAGACACGGGAAGGTTGGGTGGGGATGTACGTGATTCGCAGTGTGTTCTGGAACTACGCTGACGCCAGTTTGAAAATGGCCCGAGATTTGGGACGTAGTGGGTCGCTGAAGATTATGCTGAATGATCTGGACACATGTGGAACAGGCAGCTCCAAGAACGAGAAAAAGAAATTCCTGGTGTCTTCCGCTATCAACATCCTACACAATTGTTCAAAGGCCGCAGAAAACCGCCAGATTCTCTGTGACCTACGAGCAAAGGAAAGGATTGCTCCATTTCTGAAGTCAGATGACATGGAGGTGGTTGTGTCGGCCTTATTGACACTTGCGTACATCACCTCAGATGAGCAGAAAAAGCTGCTGGAAGCCGAGAGCAGGGTAATAAGCTACCTCATTGGCATGTTGCGTAATGCACTGGGTCAATCGGACTTACGAGGCAGATCGGATGGTACCACGTGGTCGGCTCAAGAAATCGCAGATGGCTTGGGTAACCTGGTAGTCAATGAAAAGAACATGGAGGTCATGCTGGACAGAGATATCGTTCCTCTGATGATATCACTTATCGCTAAAGGCGGTCCCACTGAAAAAGAAGGCGCTGCCAACACCTTGTGGAATATTGCAAAGACTTCTAAAGGAAAGGCAAAGATCAAGGAAACTGCGAACGCAGTGGAAGAACTGACACGTTTAAGCAAAAGTGGTAACCAGTCAGTTCAAGAGGCAGCAAAGCGAGTTCTTCTCGAGCTAAAAGAAACCGCAAGAACTACCAGAGGTACCGCAAATGTAGAACGGAGAACACGTTGTGATTATCAGGAGAAATGCCGCAAATTCAAAGCATCCCTAAAGCTGGCAGATATTTTCTTTGACCCAAAATTTGACAGATGTTTCTGTACAGAGTGTCACGCAGCTCGAGGGGACAATCTTTACTACACTCGAGGAAAACCCGCGAAGGATTACGGGATTCCAATAGGATGGTGCCGGTTTGGGCTCAAGGTCCATCACAGAGCTACCGCCCTAGACGTGTTTAACAAATGGCACGTGGCATTCCATGGCACAAGAGTGGACAGCGTAAATGCGATCTTGGAATGCGGCGATCTTCTTATCCCAGGTGATGTCGCGCTCGGAGGAAGAAAGTTAAGCGAAGAGGTTGGACATTATAATGATGACAGAAAACCAAAAGGATTTGACACCAAGCAGATCTTTGTATCACCGAGTGTTCGATACTCTGGACACAACTGTTATGCAAAGTCCAAAAGCTTTCAAGACCCGTCAACAAACGAGACCTATACTTCCAAAGCCGTTCTTCAGTTGTGTATCAACCCAGACAGTTACCAAGTTGGGCCTCAGACAATTGGTGCTACAGATGAGATCGACCCGAAGTTTAGCAATCAGGAGATTGAATGGTCTACAAAGGAACGTGGATCCATTATTCTTTATGGATTGTTAGTTAAACTTGATGAAGCCAACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R5B6	SPRY domain-containing SOCS box protein 4 OS=Mus musculus OX=10090 GN=Spsb4 PE=1 SV=1
Q96A44	SPRY domain-containing SOCS box protein 4 OS=Homo sapiens OX=9606 GN=SPSB4 PE=1 SV=1
Q5E9X6	SPRY domain-containing SOCS box protein 1 OS=Bos taurus OX=9913 GN=SPSB1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003352 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan
PF07177 all species →	Neuralized	Neuralized	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR006573 all species →	Domain	Neuralized homology repeat (NHR) domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR050672 all species →	Family	F-box/SPRY and SOCS box protein families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12245 all species →	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.1133.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.