Genomic Location: Ap4:12285080...12306365
NR annotation: XP_020621438.1, tRNA (cytosine(38)-C(5))-methyltransferase-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.1182 |
| Transcript |
| evm.model.Ap4.1182 |
| Protein |
| evm.model.Ap4.1182 |
| UniProt accession | Description |
|---|---|
| O55055 | tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Trdmt1 PE=1 SV=2 |
| O14717 | tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens OX=9606 GN=TRDMT1 PE=1 SV=1 |
| Q7YS61 | tRNA (cytosine(38)-C(5))-methyltransferase OS=Bos taurus OX=9913 GN=TRDMT1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004321 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00145 all species → | DNA_methylase | C-5 cytosine-specific DNA methylase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR050750 all species → | Family | Cytosine-specific C5-methyltransferase | Interproscan |
| IPR001525 all species → | Family | C-5 cytosine methyltransferase | Interproscan |
| IPR031303 all species → | Conserved_site | DNA methylase, C-5 cytosine-specific, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46098 all species → | TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15336 | TRDMT1, DNMT2; tRNA (cytosine38-C5)-methyltransferase | EC:2.1.1.204 | Transfer RNA biogenesis | ko03016 | deepkoala |
Transcript abundance of evm.model.Ap4.1182 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
