Gene detail

Detailed information of evm.model.Ap4.1204 in Astrangia poculata

Genomic Location: Ap4:12489289...12498051
NR annotation: CAH3045225.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000234 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01048 all species →	PNP_UDP_1	Phosphorylase superfamily	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000845 all species →	Domain	Nucleoside phosphorylase domain	Interproscan
IPR035994 all species →	Homologous_superfamily	Nucleoside phosphorylase superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46832 all species →	5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009116 all species →	Biological Process	nucleoside metabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008782 all species →	Molecular Function	adenosylhomocysteine nucleosidase activity	Interproscan
GO:0008930 all species →	Molecular Function	methylthioadenosine nucleosidase activity	Interproscan
GO:0019284 all species →	Biological Process	L-methionine salvage from S-adenosylmethionine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.1204.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.