Detailed information of evm.model.Ap4.1216 in Astrangia poculata

Genomic Location: Ap4:12579210...12579551
NR annotation: XP_027036641.1, transport and Golgi organization 2 homolog isoform X2 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q29RZ5Transport and Golgi organization protein 2 homolog OS=Bos taurus OX=9913 GN=TANGO2 PE=2 SV=1
P54797Transport and Golgi organization 2 homolog OS=Mus musculus OX=10090 GN=Tango2 PE=1 SV=2
Q6ICL3Transport and Golgi organization protein 2 homolog OS=Homo sapiens OX=9606 GN=TANGO2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002353 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05742
all species →		TANGO2Transport and Golgi organisation 2FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008551
all species →		FamilyTransport and Golgi organisation protein 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR17985
all species →		SER/THR-RICH PROTEIN T10 IN DGCR REGIONInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005794
all species →		Cellular ComponentGolgi apparatusInterproscan
GO:0007030
all species →		Biological ProcessGolgi organizationInterproscan
GO:0009306
all species →		Biological Processprotein secretionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.1216.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap4.1216 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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