Detailed information of evm.model.Ap4.1286 in Astrangia poculata

Genomic Location: Ap4:13241706...13250268
NR annotation: CAH3031264.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q54VB4Homeobox protein 9 OS=Dictyostelium discoideum OX=44689 GN=hbx9 PE=3 SV=1
O46339Homeobox protein homothorax OS=Drosophila melanogaster OX=7227 GN=hth PE=1 SV=1
A6NDR6Putative homeobox protein Meis3-like 1 OS=Homo sapiens OX=9606 GN=MEIS3P1 PE=5 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000714 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16878
all species →		SIX1_SDTranscriptional regulator, SIX1, N-terminal SD domainDomainInterproscan
PF05920
all species →		Homeobox_KNHomeobox KN domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031701
all species →		DomainHomeobox protein SIX1, N-terminal SD domainInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR008422
all species →		DomainHomeobox KN domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10390
all species →		HOMEOBOX PROTEIN SIXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005667
all species →		Cellular Componenttranscription regulator complexInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.1286.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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