Gene detail

Detailed information of evm.model.Ap4.1338 in Astrangia poculata

Genomic Location: Ap4:13871319...13893167
NR annotation: ANZ54961.1, piwi 2 [Fimbriaphyllia ancora]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.1338

atggccggccgtggaggacgaggggctgcgcttttgcaggcacttgagcaaccagcaagaccaccaggccaaggtcaaaatggaaggaatggtcaaggacaaccccctcaacaacctccctaccagggtccaccacaacccgggcctgctcagtatggtcagcggcaaccatacccacagcaatatcaacagcaacagccctaccaacaacaacaacaaggcccaagttaccaacagcaacaaggctcaggttaccaacagcaacaacctcatcgtcagcaacagccttatcaacaacaacaaggcccaggttatcaacagcaacaaccttatcatcaacaatcctatcaacaacaaccaccttatcgacaacaacagccctctcagcaacagcaacagccttatcaacaacaacaacaaccctatcaacaacagcagcagccttatcgtcaacaacaaccttaccgacagcaacaaccctatcagcaacaaccacgacctcaacaacaacaacaacaacagccacagtctttccagcaacagccctatcgccaacaacaaccctaccaacaacaacagccatatcaacaacaacaacagcagcaaccttaccagcagcgcccccagtatggtcagcaacaacagcctccgtcacagcaacaaaaccgtcagcaaatggcgcagggtcgacatcaacaggagccagctgggcgtggtcaaatgtatggacgcggagggccaacaaatggaggtccagccccatctcgtgaccagcagcctgctgcagctccacctcagtctcaagcagcaccttacggaaggggtggtcaggttggagcattttatggcagaggtgccccgccaccatctatgcaggctccttatggacgaggtgcagcaacaggggatgcccctccaccccaacctcaacctgccatgccaccagcctctcctgtacaaccttcagttccttatggacgaggtgcagcaacagggccggatgccgctcaacctcaacctgccatgccaccagcctctcctatacaaccttcagttccaccagagagacatcctccacctccacaatcacagccaagaggccctgaggttccagcagagcagatgtcaagaatgagagtgtctgaagcagataatattcctaagactcaaaagagtgaaaagggaacagctggaaaaccgatgtcgctgagtgctaacttcatcccaatcagatttatagagcgaaagatttatcagtaccatgtcacgtacagtcctgagattgacagcagaaaagcaagatatgggcttttaaagagccacagtgacattcttggatccgctagtgccttcgatgggtccatcctatttttgccaaaagaattggaaaaaccttccactgttttagagtctgaaagaagaactactggtgaaaaagtcaccataactgttaccctcacaagagttgtcccccctgatgactgcttacaactgctgaacatcattttcagaagagttatgaaagttcttcagcttcaacaagtgggccgttattactacgatcccaaaaggccggccagcattccacaacacaagttagaactttggccaggctacatcacttctattcagtgttatgaaggtggaatgatgctgttgtgtgatgtgtcacacaggcttcttaggacagagacgtgttatgatttcatgaatgagttatactccaagagaagagaccgctttgaagaagaatgcaaaaagcagctagtgggaaatattgttttaacaaggtacaacaacaagacatacagagtcgatgatgtggcctttgatcagaaccctcaaagtacatttacatttcacactggagagcagatgtcttatgtggattattacagaaaagtctacaacaaagaactacaggatttggagcaaccgctgcttgttcacagaccaaaagacaaggaacagcagaggggtagaaagccgggattggtgtgcctgatacctgaactctgttacatcactggacttacagattcagtgagacaagactttcgagtaatgaaggatattgcagcacacaccagagtaagcccaatgcagagacaacaagctatgatgaaattcattgacaacatcaattcctgtcctgaggctcttcatgaactgacatcttggggagttcagtttgataagaccatgctcagaactgaaggtcgtcagctgccattggagaagattaaccttggaagcacctcgtttcaatccagtcctcaggcagactggggccagcaggctgtcaaggaacaagttattacccctgttcctcttcgtaactggttggtactgtatgtgaacagagacaagagcaaagctcttgagtttgttaccatgatgaaaaaggtcactccagccatgggtattgaggtatctcaacctacaatgcttgacctcagagatgacagaactgaaacttacttgcgaatgatccgagaaaacctcaacccgcaaactcaagtagtggtggttatcttccccacttctcgagatgaccgttactctgccatcaaaaagctgtgctgtgtggaaagccctgttccatctcaggctatcaatgccaagacaatttcacagcagaacaagcttcgaagtgttacacagaaaattgccctgcagattaactgcaaactgggtggagaactctgggctttggatattccattgaaaagcctgatggtgattggtattgatgtgtatcatgatgcatcccgtggtggccgatcagtgggtggatttgtagcaagcatgaacaaaagtctgacccgctggtactcaagagtatgtttccagtcacccggacaggaacttattgatgggcttaaaatggctcttactgcgtcactgaggaagtatcatgaggtaaaccacactttgccagaccgtataattgtgttccgtgatggtgttggtgatggacagctaagaactgttgctggttacgaggtgcaacagctctcagagtgttttgctttgtttggtgaaagctatgagcctaagatggctgttgtaattgtgtcaaagagaatcaatgcaaggatctttgcatcccagggaaatggaccaatgcccagactggataaccctggtcctggaacagtcctggatcatactattacaagaaaggactggtatgacttttaccttatcagtcaacacgttcgtcagggcacagtgaccccaactcactacatcgttgttcatgacaagtctgaactcaaaccagactacatgcaaagattggcttacaagttaactcatctctactacaattggcctggcacagtaagggtgcctgctccatgccagtatgcgcacaagttagcatacctggttggccagaacatccacaatgaaccatcacacgatctctctgatcgtctgttcttcttgtaa

Transcript

evm.model.Ap4.1338

ATGGCCGGCCGTGGAGGACGAGGGGCTGCGCTTTTGCAGGCACTTGAGCAACCAGCAAGACCACCAGGCCAAGGTCAAAATGGAAGGAATGGTCAAGGACAACCCCCTCAACAACCTCCCTACCAGGGTCCACCACAACCCGGGCCTGCTCAGTATGGTCAGCGGCAACCATACCCACAGCAATATCAACAGCAACAGCCCTACCAACAACAACAACAAGGCCCAAGTTACCAACAGCAACAAGGCTCAGGTTACCAACAGCAACAACCTCATCGTCAGCAACAGCCTTATCAACAACAACAAGGCCCAGGTTATCAACAGCAACAACCTTATCATCAACAATCCTATCAACAACAACCACCTTATCGACAACAACAGCCCTCTCAGCAACAGCAACAGCCTTATCAACAACAACAACAACCCTATCAACAACAGCAGCAGCCTTATCGTCAACAACAACCTTACCGACAGCAACAACCCTATCAGCAACAACCACGACCTCAACAACAACAACAACAACAGCCACAGTCTTTCCAGCAACAGCCCTATCGCCAACAACAACCCTACCAACAACAACAGCCATATCAACAACAACAACAGCAGCAACCTTACCAGCAGCGCCCCCAGTATGGTCAGCAACAACAGCCTCCGTCACAGCAACAAAACCGTCAGCAAATGGCGCAGGGTCGACATCAACAGGAGCCAGCTGGGCGTGGTCAAATGTATGGACGCGGAGGGCCAACAAATGGAGGTCCAGCCCCATCTCGTGACCAGCAGCCTGCTGCAGCTCCACCTCAGTCTCAAGCAGCACCTTACGGAAGGGGTGGTCAGGTTGGAGCATTTTATGGCAGAGGTGCCCCGCCACCATCTATGCAGGCTCCTTATGGACGAGGTGCAGCAACAGGGGATGCCCCTCCACCCCAACCTCAACCTGCCATGCCACCAGCCTCTCCTGTACAACCTTCAGTTCCTTATGGACGAGGTGCAGCAACAGGGCCGGATGCCGCTCAACCTCAACCTGCCATGCCACCAGCCTCTCCTATACAACCTTCAGTTCCACCAGAGAGACATCCTCCACCTCCACAATCACAGCCAAGAGGCCCTGAGGTTCCAGCAGAGCAGATGTCAAGAATGAGAGTGTCTGAAGCAGATAATATTCCTAAGACTCAAAAGAGTGAAAAGGGAACAGCTGGAAAACCGATGTCGCTGAGTGCTAACTTCATCCCAATCAGATTTATAGAGCGAAAGATTTATCAGTACCATGTCACGTACAGTCCTGAGATTGACAGCAGAAAAGCAAGATATGGGCTTTTAAAGAGCCACAGTGACATTCTTGGATCCGCTAGTGCCTTCGATGGGTCCATCCTATTTTTGCCAAAAGAATTGGAAAAACCTTCCACTGTTTTAGAGTCTGAAAGAAGAACTACTGGTGAAAAAGTCACCATAACTGTTACCCTCACAAGAGTTGTCCCCCCTGATGACTGCTTACAACTGCTGAACATCATTTTCAGAAGAGTTATGAAAGTTCTTCAGCTTCAACAAGTGGGCCGTTATTACTACGATCCCAAAAGGCCGGCCAGCATTCCACAACACAAGTTAGAACTTTGGCCAGGCTACATCACTTCTATTCAGTGTTATGAAGGTGGAATGATGCTGTTGTGTGATGTGTCACACAGGCTTCTTAGGACAGAGACGTGTTATGATTTCATGAATGAGTTATACTCCAAGAGAAGAGACCGCTTTGAAGAAGAATGCAAAAAGCAGCTAGTGGGAAATATTGTTTTAACAAGGTACAACAACAAGACATACAGAGTCGATGATGTGGCCTTTGATCAGAACCCTCAAAGTACATTTACATTTCACACTGGAGAGCAGATGTCTTATGTGGATTATTACAGAAAAGTCTACAACAAAGAACTACAGGATTTGGAGCAACCGCTGCTTGTTCACAGACCAAAAGACAAGGAACAGCAGAGGGGTAGAAAGCCGGGATTGGTGTGCCTGATACCTGAACTCTGTTACATCACTGGACTTACAGATTCAGTGAGACAAGACTTTCGAGTAATGAAGGATATTGCAGCACACACCAGAGTAAGCCCAATGCAGAGACAACAAGCTATGATGAAATTCATTGACAACATCAATTCCTGTCCTGAGGCTCTTCATGAACTGACATCTTGGGGAGTTCAGTTTGATAAGACCATGCTCAGAACTGAAGGTCGTCAGCTGCCATTGGAGAAGATTAACCTTGGAAGCACCTCGTTTCAATCCAGTCCTCAGGCAGACTGGGGCCAGCAGGCTGTCAAGGAACAAGTTATTACCCCTGTTCCTCTTCGTAACTGGTTGGTACTGTATGTGAACAGAGACAAGAGCAAAGCTCTTGAGTTTGTTACCATGATGAAAAAGGTCACTCCAGCCATGGGTATTGAGGTATCTCAACCTACAATGCTTGACCTCAGAGATGACAGAACTGAAACTTACTTGCGAATGATCCGAGAAAACCTCAACCCGCAAACTCAAGTAGTGGTGGTTATCTTCCCCACTTCTCGAGATGACCGTTACTCTGCCATCAAAAAGCTGTGCTGTGTGGAAAGCCCTGTTCCATCTCAGGCTATCAATGCCAAGACAATTTCACAGCAGAACAAGCTTCGAAGTGTTACACAGAAAATTGCCCTGCAGATTAACTGCAAACTGGGTGGAGAACTCTGGGCTTTGGATATTCCATTGAAAAGCCTGATGGTGATTGGTATTGATGTGTATCATGATGCATCCCGTGGTGGCCGATCAGTGGGTGGATTTGTAGCAAGCATGAACAAAAGTCTGACCCGCTGGTACTCAAGAGTATGTTTCCAGTCACCCGGACAGGAACTTATTGATGGGCTTAAAATGGCTCTTACTGCGTCACTGAGGAAGTATCATGAGGTAAACCACACTTTGCCAGACCGTATAATTGTGTTCCGTGATGGTGTTGGTGATGGACAGCTAAGAACTGTTGCTGGTTACGAGGTGCAACAGCTCTCAGAGTGTTTTGCTTTGTTTGGTGAAAGCTATGAGCCTAAGATGGCTGTTGTAATTGTGTCAAAGAGAATCAATGCAAGGATCTTTGCATCCCAGGGAAATGGACCAATGCCCAGACTGGATAACCCTGGTCCTGGAACAGTCCTGGATCATACTATTACAAGAAAGGACTGGTATGACTTTTACCTTATCAGTCAACACGTTCGTCAGGGCACAGTGACCCCAACTCACTACATCGTTGTTCATGACAAGTCTGAACTCAAACCAGACTACATGCAAAGATTGGCTTACAAGTTAACTCATCTCTACTACAATTGGCCTGGCACAGTAAGGGTGCCTGCTCCATGCCAGTATGCGCACAAGTTAGCATACCTGGTTGGCCAGAACATCCACAATGAACCATCACACGATCTCTCTGATCGTCTGTTCTTCTTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96J94	Piwi-like protein 1 OS=Homo sapiens OX=9606 GN=PIWIL1 PE=1 SV=1
Q9JMB7	Piwi-like protein 1 OS=Mus musculus OX=10090 GN=Piwil1 PE=1 SV=1
A2CEI6	Piwi-like protein 2 OS=Danio rerio OX=7955 GN=piwil2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001540 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08699 all species →	ArgoL1	Argonaute linker 1 domain	Domain	Interproscan
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF02171 all species →	Piwi	Piwi domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014811 all species →	Domain	Argonaute, linker 1 domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR003165 all species →	Domain	Piwi domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0031047 all species →	Biological Process	regulatory ncRNA-mediated gene silencing	Interproscan
GO:0034584 all species →	Molecular Function	piRNA binding	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02156	AUB, PIWI; aubergine	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.