Gene detail

Detailed information of evm.model.Ap4.1384 in Astrangia poculata

Genomic Location: Ap4:14561257...14575190
NR annotation: CAH3031318.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.1384

atggaaagccgcgttcttctcatgtgtttggtgatcgttctgtttaacgccgcgcatgggacaagcttgggcgttgtaagatctccaggacagctcactgggaaagaaaacccgactggccatgttacagtcaagcctgagtttatcgcagaaccagatgataaatttgccttgccaaacactcaagcagatttggtctgcgaggccaaatttgtgtcaaggttaaagttcaactgttccgggggactggttcccagggagatctataaatatgaagatgtggataatgtgacattgcttgttgccgagatctcccaagctttgattgtaaacagggattctgtggttctctgcatttgtgtcgctactggttacaatggacaggtgataaggagtcgtgctgcagctgtccagaaagcttatctggatgaggacttcgtcatctcaccatcagctgacaccagagttcagaaaaattctctagtgactttaagatgccagcccccagcaggaaacccaagcccagctgtgtcttggtggaaagatgggcatcctgtggatacagacaagaatagaagagtgttgacaaaaagccatgctaacttttctcttgtggttataaagaaaccaaaattatcagatggtggatattactcttgtgtggcgtcaaaccttgttggaaggcgtgagagtgccacgatcaagataactgtgtatgttgatggcggttggtctgagtggagagtttggagatcatgcacagctaaatgtgggaatggaactaagatgctaaggcgttggtgtacaaatcctgcaccagaaaatggaggacaactctgtacaggaccaagtgttagaatagagccatgtcaagaaatttgcccagatgtagaaattacctgccctaatcacaccaatgtgtatatcaaccggtcagatgttgcatttaaaaatgtctcttggaataaacctcttgttcataataagaagaatggtacaaagttctctgttgaagtttttccacaatgggcaaaaccacctgtgccgctcccagcaagaagtgctgtgtatgttattaagtatgtggtgacgcacgagtttggccagacagccagttgttccttcaacataacagtctataatggctcttccagtgcatgtttaacaaaggactgtaacaagcatgcgacagacgctaatacacatcccacaagtggtaatcctaatgttggtaaagaggaaaaaatgtcaggttcttttgcagatagcacatgggttgtgatatcgattttggcagtggttgtgctgcttagtgttatatttttattggcaaaatttcggactcatcatatcaaactcagccagatgtattcagccacaaaacgacatgaaggtgcaaaagatacattggaccatgcatcgcctgtcatcaccaggtctgcatcttacctggaggttgcaggaggatctgaaaagctgcatgcaggatctcccattgattcagaagtttttgagttcccaattgcatgcaaagaccctgttaacacaatgcagattgaagttgaaatcacagatggacaaaagagggagagagatcgcgactacaagaggacaaactcttccatcagtaacaagtcaacagtgtcagaaatctctagaatgatgtggaacatgtccaacatccctgagaatgctgatcctaagatggtcgcatgggggctggtggatcacaatggagggaagttcactatagctaacacaggtgtgagcctcaccgtccccccacaggctattccagagggtcgcacagaaggtatatacatagccatcatgaaccaagaaaaagaacatccccagatcactgccaaggaatcattgctgagtccggtagtaaagtgtggtccaacaggactcaagtttcagcgccctgtgatactgagtatgccacactgtgctcttctcgaggaagatgcttggaatcttaaagtccagtacaatgaaagtgagccaagcacagctgcagactggaaacagttgattgacgtcaacaagcaggatgggtctgagccgtcccatgttgtagttgaaccgaacatggttcatttgatggtggatcactttactttgtttgctttgactggagaatcagcggctaaacatcaagctcctaaagttgttcaagctctagcttatgcaacacctcccaaggcaaatggagactgtgttgtgagagtgtattgtgttgcaggcactgcagcggcagaggaggatgtacacaatcaagaaatgcaaaagtatggaggagaaacgatagaaagacctcaacaacttcgatttaaggatgggggcggagatcttttagtagaactcaaagacctccggcagggctggacaagtggaatcaccacaaaaagaattcgtttccgcgacatttgggaaggtattgagcgcatgcccagctgtacatttgtgttttccatgtccgacacaagtgtgtctcagtttcgtgcggaatttggagtgaggcaggactgcgaaggtggtgatgaaggagaaattaatgtgttgacatccgtcaaacaagggcccagggaaaacccaggcccaagtaaggaagctgcgaaccaatctaacaacagtcttacttgtacttcatgtaaagcctcggcaaacttgcccgctaaagctgcaagctcaccatgtttagtagaccattccactgcccttgtgaatgcaggatcgctcatcaaccattggcaatgttcgcaggcggatgtcccagggacatgtggaggggggcctgctgcgtctccagttgctttgaatcagatgtcttctggttacttttctgttggtttcgaatcgctaccaactgtgaactcacctagtcgcgagttacgcagtaaactttctgtaattctagaccctccacacgaatccgattggaaagttctggcagaaaatatcggactcagttatcaagacattcgatggattgactgtaggaaaggtttctctcctacagaaatcctttttaatttatgggaaacaagagacagtttaagatatcgatttcctcttcgaaaaatggcggaaatacttcataagatggaaagggatgacgctgttgagataatcgaggctcagctactgacaccgaaagagacttcagtttag

Transcript

evm.model.Ap4.1384

ATGGAAAGCCGCGTTCTTCTCATGTGTTTGGTGATCGTTCTGTTTAACGCCGCGCATGGGACAAGCTTGGGCGTTGTAAGATCTCCAGGACAGCTCACTGGGAAAGAAAACCCGACTGGCCATGTTACAGTCAAGCCTGAGTTTATCGCAGAACCAGATGATAAATTTGCCTTGCCAAACACTCAAGCAGATTTGGTCTGCGAGGCCAAATTTGTGTCAAGGTTAAAGTTCAACTGTTCCGGGGGACTGGTTCCCAGGGAGATCTATAAATATGAAGATGTGGATAATGTGACATTGCTTGTTGCCGAGATCTCCCAAGCTTTGATTGTAAACAGGGATTCTGTGGTTCTCTGCATTTGTGTCGCTACTGGTTACAATGGACAGGTGATAAGGAGTCGTGCTGCAGCTGTCCAGAAAGCTTATCTGGATGAGGACTTCGTCATCTCACCATCAGCTGACACCAGAGTTCAGAAAAATTCTCTAGTGACTTTAAGATGCCAGCCCCCAGCAGGAAACCCAAGCCCAGCTGTGTCTTGGTGGAAAGATGGGCATCCTGTGGATACAGACAAGAATAGAAGAGTGTTGACAAAAAGCCATGCTAACTTTTCTCTTGTGGTTATAAAGAAACCAAAATTATCAGATGGTGGATATTACTCTTGTGTGGCGTCAAACCTTGTTGGAAGGCGTGAGAGTGCCACGATCAAGATAACTGTGTATGTTGATGGCGGTTGGTCTGAGTGGAGAGTTTGGAGATCATGCACAGCTAAATGTGGGAATGGAACTAAGATGCTAAGGCGTTGGTGTACAAATCCTGCACCAGAAAATGGAGGACAACTCTGTACAGGACCAAGTGTTAGAATAGAGCCATGTCAAGAAATTTGCCCAGATGTAGAAATTACCTGCCCTAATCACACCAATGTGTATATCAACCGGTCAGATGTTGCATTTAAAAATGTCTCTTGGAATAAACCTCTTGTTCATAATAAGAAGAATGGTACAAAGTTCTCTGTTGAAGTTTTTCCACAATGGGCAAAACCACCTGTGCCGCTCCCAGCAAGAAGTGCTGTGTATGTTATTAAGTATGTGGTGACGCACGAGTTTGGCCAGACAGCCAGTTGTTCCTTCAACATAACAGTCTATAATGGCTCTTCCAGTGCATGTTTAACAAAGGACTGTAACAAGCATGCGACAGACGCTAATACACATCCCACAAGTGGTAATCCTAATGTTGGTAAAGAGGAAAAAATGTCAGGTTCTTTTGCAGATAGCACATGGGTTGTGATATCGATTTTGGCAGTGGTTGTGCTGCTTAGTGTTATATTTTTATTGGCAAAATTTCGGACTCATCATATCAAACTCAGCCAGATGTATTCAGCCACAAAACGACATGAAGGTGCAAAAGATACATTGGACCATGCATCGCCTGTCATCACCAGGTCTGCATCTTACCTGGAGGTTGCAGGAGGATCTGAAAAGCTGCATGCAGGATCTCCCATTGATTCAGAAGTTTTTGAGTTCCCAATTGCATGCAAAGACCCTGTTAACACAATGCAGATTGAAGTTGAAATCACAGATGGACAAAAGAGGGAGAGAGATCGCGACTACAAGAGGACAAACTCTTCCATCAGTAACAAGTCAACAGTGTCAGAAATCTCTAGAATGATGTGGAACATGTCCAACATCCCTGAGAATGCTGATCCTAAGATGGTCGCATGGGGGCTGGTGGATCACAATGGAGGGAAGTTCACTATAGCTAACACAGGTGTGAGCCTCACCGTCCCCCCACAGGCTATTCCAGAGGGTCGCACAGAAGGTATATACATAGCCATCATGAACCAAGAAAAAGAACATCCCCAGATCACTGCCAAGGAATCATTGCTGAGTCCGGTAGTAAAGTGTGGTCCAACAGGACTCAAGTTTCAGCGCCCTGTGATACTGAGTATGCCACACTGTGCTCTTCTCGAGGAAGATGCTTGGAATCTTAAAGTCCAGTACAATGAAAGTGAGCCAAGCACAGCTGCAGACTGGAAACAGTTGATTGACGTCAACAAGCAGGATGGGTCTGAGCCGTCCCATGTTGTAGTTGAACCGAACATGGTTCATTTGATGGTGGATCACTTTACTTTGTTTGCTTTGACTGGAGAATCAGCGGCTAAACATCAAGCTCCTAAAGTTGTTCAAGCTCTAGCTTATGCAACACCTCCCAAGGCAAATGGAGACTGTGTTGTGAGAGTGTATTGTGTTGCAGGCACTGCAGCGGCAGAGGAGGATGTACACAATCAAGAAATGCAAAAGTATGGAGGAGAAACGATAGAAAGACCTCAACAACTTCGATTTAAGGATGGGGGCGGAGATCTTTTAGTAGAACTCAAAGACCTCCGGCAGGGCTGGACAAGTGGAATCACCACAAAAAGAATTCGTTTCCGCGACATTTGGGAAGGTATTGAGCGCATGCCCAGCTGTACATTTGTGTTTTCCATGTCCGACACAAGTGTGTCTCAGTTTCGTGCGGAATTTGGAGTGAGGCAGGACTGCGAAGGTGGTGATGAAGGAGAAATTAATGTGTTGACATCCGTCAAACAAGGGCCCAGGGAAAACCCAGGCCCAAGTAAGGAAGCTGCGAACCAATCTAACAACAGTCTTACTTGTACTTCATGTAAAGCCTCGGCAAACTTGCCCGCTAAAGCTGCAAGCTCACCATGTTTAGTAGACCATTCCACTGCCCTTGTGAATGCAGGATCGCTCATCAACCATTGGCAATGTTCGCAGGCGGATGTCCCAGGGACATGTGGAGGGGGGCCTGCTGCGTCTCCAGTTGCTTTGAATCAGATGTCTTCTGGTTACTTTTCTGTTGGTTTCGAATCGCTACCAACTGTGAACTCACCTAGTCGCGAGTTACGCAGTAAACTTTCTGTAATTCTAGACCCTCCACACGAATCCGATTGGAAAGTTCTGGCAGAAAATATCGGACTCAGTTATCAAGACATTCGATGGATTGACTGTAGGAAAGGTTTCTCTCCTACAGAAATCCTTTTTAATTTATGGGAAACAAGAGACAGTTTAAGATATCGATTTCCTCTTCGAAAAATGGCGGAAATACTTCATAAGATGGAAAGGGATGACGCTGTTGAGATAATCGAGGCTCAGCTACTGACACCGAAAGAGACTTCAGTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T2Z5	Netrin receptor UNC5C OS=Gallus gallus OX=9031 GN=UNC5C PE=2 SV=1
O08747	Netrin receptor UNC5C OS=Mus musculus OX=10090 GN=Unc5c PE=1 SV=1
Q761X5	Netrin receptor UNC5C OS=Rattus norvegicus OX=10116 GN=Unc5c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004837 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF17217 all species →	UPA	UPA domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037936 all species →	Family	Netrin receptor UNC5	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR033772 all species →	Domain	UPA domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12582 all species →	NETRIN RECEPTOR UNC5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005042 all species →	Molecular Function	netrin receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038007 all species →	Biological Process	netrin-activated signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07521	UNC5; netrin receptor unc-5	-	Axon guidance	ko04360	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.