Genomic Location: Ap4:1431851...1441207
NR annotation: XP_020612223.1, acyl-coenzyme A synthetase ACSM3, mitochondrial-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.142 |
| Transcript |
| evm.model.Ap4.142 |
| Protein |
| evm.model.Ap4.142 |
| UniProt accession | Description |
|---|---|
| P0C7M7 | Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Homo sapiens OX=9606 GN=ACSM4 PE=1 SV=1 |
| Q3UNX5 | Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Mus musculus OX=10090 GN=Acsm3 PE=1 SV=2 |
| Q8BGA8 | Acyl-coenzyme A synthetase ACSM5, mitochondrial OS=Mus musculus OX=10090 GN=Acsm5 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001421 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00501 all species → | AMP-binding | AMP-binding enzyme | Family | Interproscan |
| PF13193 all species → | AMP-binding_C | AMP-binding enzyme C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045851 all species → | Homologous_superfamily | AMP-binding enzyme, C-terminal domain superfamily | Interproscan |
| IPR042099 all species → | Homologous_superfamily | ANL, N-terminal domain | Interproscan |
| IPR000873 all species → | Domain | AMP-dependent synthetase/ligase domain | Interproscan |
| IPR025110 all species → | Domain | AMP-binding enzyme, C-terminal domain | Interproscan |
| IPR051087 all species → | Family | Mitochondrial Acyl-CoA Synthetase Medium-Chain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43605 all species → | ACYL-COENZYME A SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004321 all species → | Molecular Function | fatty-acyl-CoA synthase activity | Interproscan |
| GO:0005759 all species → | Cellular Component | mitochondrial matrix | Interproscan |
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| GO:0006637 all species → | Biological Process | acyl-CoA metabolic process | Interproscan |
| GO:0015645 all species → | Molecular Function | fatty acid ligase activity | Interproscan |
evm.model.Ap4.142.Transcript abundance of evm.model.Ap4.142 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
