Gene detail

Detailed information of evm.model.Ap4.1464 in Astrangia poculata

Genomic Location: Ap4:15153430...15158684
NR annotation: XP_015766028.1, PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107344853 [Acropora digitifera]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.1464

atgtatcaattttctcctaagccccagcgaaagaatgtccctttagatgatgacgtgtatgaagcgcttttcagtgttctaagtggagcaagaacctttagggactggccgaagaattctgaagggaacttaaggcaacgagtttaccgaaaatggaaaagcaacctgtatgaagtgaaagaaattcacgatccaatcgaaggctgtttatcaaaacgcatcatatgcaaaggatcaaactgtatggttgtacgaaaatcagaaatcccgcttatagttgatcgcgtttaccacgaaacaaaaggtgacggtgccagaaagttgaagttgcatacctcgcatcattacagcggattatcccgaaatgccattcaaaaaaatttgaacgtcatgaagcagccccaaaaactgagaccgctttttcaaaacaaagctcccctcagaccaattaaagcttgtcgagtacaagagagacaccaagttgaccttgtgaatatggcgagtatgccagcggccatagatggtgacaaatacaatgcaggttcctttttccctgagctgcaaaagcacgcgctcctaaaagcggctcgcatgcaacaagaaaatgatgtttcagtcgcgtttgatgatttgggttcaggcatcatggatcatttcttattgaccttattggaatcgatcatgagtcaggcggattccagggtagcaatacctgatggtaaaagtttaacaacttgcgagaatattgctttaatcaagcctttactgtctggggtagcaatacctgatgagtcaagcgaagtagcggaacacttacttgatatttacaacgaacatggtcccccgaaaattcttcaaagcgatcaaggaactgagttcaagggtgtcgtgaaggtcatatgcgaagcacttaatgttcgaatcattaatagtgcagcgtacagtccacaaactcaagggaaggacgagcgctcccacaaaacatggaaagagaaaatcaaatttgacattattaattgcgataatgatcttaattgggtagaaaacctccccgagtaccaaaaactctacaacgaatcaccacacagctcacttggcttcttgacgccatttgaagtatattttggtcgcccctctaacagaccaaaaaataaactgtttcttggtgagaaaaaagtcgagttccaagttccagaagaaaatgttgacgaaaccaactacgaccccacagaagaagagttaagcaatttggcaagtgaacgaagtgttttgcggaagaaagctttggatgcttccaatgacgcggcgcagaaaatggtgaaaagagaactgaaacgtcagcctccttcgttgtattataaaggagagtccgtcctggtccgaatccctatttcgaaaaaaactgttaaaggaaagaaaacatcgttgaaaaacagctgcgaaggtcttatcattgacgccgatcacagtcttcataagtataacatcgaatttaatgatccagtcaaaagtaagaaaaaaaaagcttggtttaaagtagacgacgtcacgtcgttaacaaaggaagaggaaaacgagcggcaagaaatctccaaacaaaaggttcgtcgaagtagaaagcgacaagctggacccgaaagtcatactgaaactgatcaagtacgtggatctctcccaaaggcaattcgaaaggagagtattctagatgcaagcataaatcaagtaatctctggcgaaaagttaaatggtgacactgttaacttctatttccattatttaagagaaaactatgcttgctcggaagcagacacaattggtttaggaagctcatatttttacccctctttagaacgcagagacgatgcatatagaaagtacattggcaaaaaatcactgtgggagtatgaaaacgtaatgatacctgtacatttgccccgcgaaaagcactggtttcttctggttatcagtatcatcaacctttgcctttatatttatgattccgctaacagccatcctcataggtataaaaccgtctttgacacgattaaaaacaaattcataagaaaggaatgcgagctgttaacttcagaggaaagtgagcttttccgagaaaacaactggggcgaagaactccccaagtgtccaaagcaaaggaacgaaactgactgtggtgttttcacttgcttgcttgctaagcatctgatttccggtgggcagtgtaatgctgacatgaatttcgatcacccgcgcgatgaaatggcaagtgatttattaaaccttgcgacagctgaaaccagccgagttcaaagtttgcctgagaatctacagtggatttttagaaaggatgcgaacaatgatgaatcagcaaaaattaagcttgacagagaagtcactagtgcgggtcttagctatcgacggcctcctacaccaaaagacggaaattgcttgtttcatgcaataagcgaccaactatctcgtctgggaaagccctttcagacagcatcgcaacttcgcactggtgtggttgacttcctacgaagcaacccgaccactcccgacggcattcattttagagagttcgtgaatcacagtggatgggagacgtacctacgccgcatgtccatggatggtgagtggggagattacattgcccttcttggcctcgtaaacatgcttgaaattccggtggcggtggtatcaagcttaggagaagaaggcttaaacataatctctccaaccgctactcacgatgcagctgaagccgatttcgacagcattgccttgcttggtcatgaggctgaaagtcacttccacagccttcaaccaatggaagatcaaaacccagacgcagttgaagtaatgaaattgaagtatggcgaagggagaataaccgtagacgaaatttgcccaaaatgcggaaaaaaattcgtttgctattccagtggtgtattcgaaggtgaaaatggagccgtgcaggtctattctgatgacagtgtcttttgtgaaaattgtttagcagagtccgattaa

Transcript

evm.model.Ap4.1464

ATGTATCAATTTTCTCCTAAGCCCCAGCGAAAGAATGTCCCTTTAGATGATGACGTGTATGAAGCGCTTTTCAGTGTTCTAAGTGGAGCAAGAACCTTTAGGGACTGGCCGAAGAATTCTGAAGGGAACTTAAGGCAACGAGTTTACCGAAAATGGAAAAGCAACCTGTATGAAGTGAAAGAAATTCACGATCCAATCGAAGGCTGTTTATCAAAACGCATCATATGCAAAGGATCAAACTGTATGGTTGTACGAAAATCAGAAATCCCGCTTATAGTTGATCGCGTTTACCACGAAACAAAAGGTGACGGTGCCAGAAAGTTGAAGTTGCATACCTCGCATCATTACAGCGGATTATCCCGAAATGCCATTCAAAAAAATTTGAACGTCATGAAGCAGCCCCAAAAACTGAGACCGCTTTTTCAAAACAAAGCTCCCCTCAGACCAATTAAAGCTTGTCGAGTACAAGAGAGACACCAAGTTGACCTTGTGAATATGGCGAGTATGCCAGCGGCCATAGATGGTGACAAATACAATGCAGGTTCCTTTTTCCCTGAGCTGCAAAAGCACGCGCTCCTAAAAGCGGCTCGCATGCAACAAGAAAATGATGTTTCAGTCGCGTTTGATGATTTGGGTTCAGGCATCATGGATCATTTCTTATTGACCTTATTGGAATCGATCATGAGTCAGGCGGATTCCAGGGTAGCAATACCTGATGGTAAAAGTTTAACAACTTGCGAGAATATTGCTTTAATCAAGCCTTTACTGTCTGGGGTAGCAATACCTGATGAGTCAAGCGAAGTAGCGGAACACTTACTTGATATTTACAACGAACATGGTCCCCCGAAAATTCTTCAAAGCGATCAAGGAACTGAGTTCAAGGGTGTCGTGAAGGTCATATGCGAAGCACTTAATGTTCGAATCATTAATAGTGCAGCGTACAGTCCACAAACTCAAGGGAAGGACGAGCGCTCCCACAAAACATGGAAAGAGAAAATCAAATTTGACATTATTAATTGCGATAATGATCTTAATTGGGTAGAAAACCTCCCCGAGTACCAAAAACTCTACAACGAATCACCACACAGCTCACTTGGCTTCTTGACGCCATTTGAAGTATATTTTGGTCGCCCCTCTAACAGACCAAAAAATAAACTGTTTCTTGGTGAGAAAAAAGTCGAGTTCCAAGTTCCAGAAGAAAATGTTGACGAAACCAACTACGACCCCACAGAAGAAGAGTTAAGCAATTTGGCAAGTGAACGAAGTGTTTTGCGGAAGAAAGCTTTGGATGCTTCCAATGACGCGGCGCAGAAAATGGTGAAAAGAGAACTGAAACGTCAGCCTCCTTCGTTGTATTATAAAGGAGAGTCCGTCCTGGTCCGAATCCCTATTTCGAAAAAAACTGTTAAAGGAAAGAAAACATCGTTGAAAAACAGCTGCGAAGGTCTTATCATTGACGCCGATCACAGTCTTCATAAGTATAACATCGAATTTAATGATCCAGTCAAAAGTAAGAAAAAAAAAGCTTGGTTTAAAGTAGACGACGTCACGTCGTTAACAAAGGAAGAGGAAAACGAGCGGCAAGAAATCTCCAAACAAAAGGTTCGTCGAAGTAGAAAGCGACAAGCTGGACCCGAAAGTCATACTGAAACTGATCAAGTACGTGGATCTCTCCCAAAGGCAATTCGAAAGGAGAGTATTCTAGATGCAAGCATAAATCAAGTAATCTCTGGCGAAAAGTTAAATGGTGACACTGTTAACTTCTATTTCCATTATTTAAGAGAAAACTATGCTTGCTCGGAAGCAGACACAATTGGTTTAGGAAGCTCATATTTTTACCCCTCTTTAGAACGCAGAGACGATGCATATAGAAAGTACATTGGCAAAAAATCACTGTGGGAGTATGAAAACGTAATGATACCTGTACATTTGCCCCGCGAAAAGCACTGGTTTCTTCTGGTTATCAGTATCATCAACCTTTGCCTTTATATTTATGATTCCGCTAACAGCCATCCTCATAGGTATAAAACCGTCTTTGACACGATTAAAAACAAATTCATAAGAAAGGAATGCGAGCTGTTAACTTCAGAGGAAAGTGAGCTTTTCCGAGAAAACAACTGGGGCGAAGAACTCCCCAAGTGTCCAAAGCAAAGGAACGAAACTGACTGTGGTGTTTTCACTTGCTTGCTTGCTAAGCATCTGATTTCCGGTGGGCAGTGTAATGCTGACATGAATTTCGATCACCCGCGCGATGAAATGGCAAGTGATTTATTAAACCTTGCGACAGCTGAAACCAGCCGAGTTCAAAGTTTGCCTGAGAATCTACAGTGGATTTTTAGAAAGGATGCGAACAATGATGAATCAGCAAAAATTAAGCTTGACAGAGAAGTCACTAGTGCGGGTCTTAGCTATCGACGGCCTCCTACACCAAAAGACGGAAATTGCTTGTTTCATGCAATAAGCGACCAACTATCTCGTCTGGGAAAGCCCTTTCAGACAGCATCGCAACTTCGCACTGGTGTGGTTGACTTCCTACGAAGCAACCCGACCACTCCCGACGGCATTCATTTTAGAGAGTTCGTGAATCACAGTGGATGGGAGACGTACCTACGCCGCATGTCCATGGATGGTGAGTGGGGAGATTACATTGCCCTTCTTGGCCTCGTAAACATGCTTGAAATTCCGGTGGCGGTGGTATCAAGCTTAGGAGAAGAAGGCTTAAACATAATCTCTCCAACCGCTACTCACGATGCAGCTGAAGCCGATTTCGACAGCATTGCCTTGCTTGGTCATGAGGCTGAAAGTCACTTCCACAGCCTTCAACCAATGGAAGATCAAAACCCAGACGCAGTTGAAGTAATGAAATTGAAGTATGGCGAAGGGAGAATAACCGTAGACGAAATTTGCCCAAAATGCGGAAAAAAATTCGTTTGCTATTCCAGTGGTGTATTCGAAGGTGAAAATGGAGCCGTGCAGGTCTATTCTGATGACAGTGTCTTTTGTGAAAATTGTTTAGCAGAGTCCGATTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000295 (this species only)
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR050704 all species →	Family	OTU domain-containing ubiquitin thioesterase	Interproscan
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12419 all species →	OTU DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.1464.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.