Gene detail

Detailed information of evm.model.Ap4.1487 in Astrangia poculata

Genomic Location: Ap4:15335176...15348289
NR annotation: XP_020608874.1, PDZ and LIM domain protein 5-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.1487

atggccggcgctacgtacacggcttcactcagaggcggtggtccgtggggctttcgactgcaaggcggtaaagatttcgggaatccgctctccatatcgaaggtaacaccaagctccaaagccgatcttgccagcataaattcaggggattatgttttagaagtaaacgggcattcatcggatgatatgactcattttgatgctcaagatgccgtcagaagggcagggcaaagtctcgacctacttcttcaaaggaaagagggtaccaaaacaatcgtggtgacagaaacagtccactcagcaaaggttgaccacaaattcaatgcaaagccaaagccatttggggtgacttcaccacctcagatctcgcagcctcaaactgcaacaactggacgcacctctccagcaggcggtagctcatggcaaccaccggtcgtccaggctcagcgtgctcctgttgcaaaaactggaccagtggcagtcgtgtcagcccagcctgttcccccaccacccgctcctccctccataccacagtcaaggggaccagggtatgaccacacagacaggggagttgccagacctggccaagatgacagagatcttgctgaacgttttaaactgaacattagtgatgatggtgatgtgggctttgctgatgagccaccaacttggggacatccaccagatcctaaagtccagtccaagtcttttaagttacttcagagacatcttgatcaccatgaagaagatgatctcccacctcctcccccagaagcttttaatgacccagatgcagaggaggacaagcatgttcagtcacgaacatttaagatgcttcaggatgctgtgcaatctggagatgctccagggagtgtctttgacaggccaaaaggagatcgcagcaagccatccaacaccccgcttcctaaaatgtacagacccaatccaccagtaatcaaacctgcccacagtatgccagtagccccacccgctccagttatggcacagccagggcaaccgcagcctgttgcccttccagggatggtccaaatgagtcaaccagctgcgccatcccaaccgatgcgtaatccttcacagaaaatgccgtcatctgcttctcctgcagcactgtcccctacatcttctcccggacagccagagtggaagaggacacccactaagcctccttctgctcatccagtcgaggagactagaactccattctgtgatgcctgtggaggaggaagttttggaccttttgtgagtgcgattggtaaggcatggcacccgcagcattttgtgtgtgatggatgcggcgaatcactgcagaaccagggcttcattgaagaaggaggaaagctttactgtgaaaaggacttcaataagtactttgctcctcactgtgacacttgcaagcagcccataagtgggccaaagagcctgcacgcttgtccgccagcggtaccaccgccttcaagtgcaatgctcaaggccatacgcgaggcttccgtgaaatccaagaatcccccagaagccgctgtaaaatctcaaaatcaacgtttgaacaatgcactgacattaaaaaatgatcctcaagaagaccacgtcaaacgggcgaatagcttatcttcaacttaccctaccccagtgtacggagttaattacccccggagaagtagcagctcttctgatacgaataacaattggcctgcttcttctggcattagtaatgttaccagtttaaagtcgttagaacatccaatcactgaacccggagtggggtccattcgggataaggttgtcgccttgaaggaggccttgcgccaagccactgaacgccaaactgtagcaaaacaaggcatcccgccagccgtaaagcgtttccaagaagcgaaaaagttgctagccaaactcgagcgaaagagatttatagctgaggataaggttgttaaactcgaagagcgtattcgttatcaggaaggaaggttggatagcaaatacagagctatgtctgagaactggcaagtgaatcataagatcgaacaacagaagaacgaagacgtaagaaacatcaggaacattgaatacgaactgacggaagtgaaagccgcgaaggaggcgtccatgaagcgcgttcaagaagccgcgcgccgagctgtcgttgtccaatcggcgctacagaacgcggaagaccgcaggcgcgaactgagctcgcgcaggcgcacacttcaggacatgttggaaatgtatcacaggcgaatcaaggagctgaggaacaaatcgagagagaagtcaacccatgtcgaggacaagttcctgaggatgaacctgatggaagactatatagcagacagcaacgaccggtttagaagggcggaaaggaggctactgcctttaaagatttacatcaaccagctgcatgattctctagagcaagcaagaaatgagacccgacacgctgggtatcttttagcaaactgtcaacagagacgtaaaggacaaaaatacacgtattatccatatgataagtag

Transcript

evm.model.Ap4.1487

ATGGCCGGCGCTACGTACACGGCTTCACTCAGAGGCGGTGGTCCGTGGGGCTTTCGACTGCAAGGCGGTAAAGATTTCGGGAATCCGCTCTCCATATCGAAGGTAACACCAAGCTCCAAAGCCGATCTTGCCAGCATAAATTCAGGGGATTATGTTTTAGAAGTAAACGGGCATTCATCGGATGATATGACTCATTTTGATGCTCAAGATGCCGTCAGAAGGGCAGGGCAAAGTCTCGACCTACTTCTTCAAAGGAAAGAGGGTACCAAAACAATCGTGGTGACAGAAACAGTCCACTCAGCAAAGGTTGACCACAAATTCAATGCAAAGCCAAAGCCATTTGGGGTGACTTCACCACCTCAGATCTCGCAGCCTCAAACTGCAACAACTGGACGCACCTCTCCAGCAGGCGGTAGCTCATGGCAACCACCGGTCGTCCAGGCTCAGCGTGCTCCTGTTGCAAAAACTGGACCAGTGGCAGTCGTGTCAGCCCAGCCTGTTCCCCCACCACCCGCTCCTCCCTCCATACCACAGTCAAGGGGACCAGGGTATGACCACACAGACAGGGGAGTTGCCAGACCTGGCCAAGATGACAGAGATCTTGCTGAACGTTTTAAACTGAACATTAGTGATGATGGTGATGTGGGCTTTGCTGATGAGCCACCAACTTGGGGACATCCACCAGATCCTAAAGTCCAGTCCAAGTCTTTTAAGTTACTTCAGAGACATCTTGATCACCATGAAGAAGATGATCTCCCACCTCCTCCCCCAGAAGCTTTTAATGACCCAGATGCAGAGGAGGACAAGCATGTTCAGTCACGAACATTTAAGATGCTTCAGGATGCTGTGCAATCTGGAGATGCTCCAGGGAGTGTCTTTGACAGGCCAAAAGGAGATCGCAGCAAGCCATCCAACACCCCGCTTCCTAAAATGTACAGACCCAATCCACCAGTAATCAAACCTGCCCACAGTATGCCAGTAGCCCCACCCGCTCCAGTTATGGCACAGCCAGGGCAACCGCAGCCTGTTGCCCTTCCAGGGATGGTCCAAATGAGTCAACCAGCTGCGCCATCCCAACCGATGCGTAATCCTTCACAGAAAATGCCGTCATCTGCTTCTCCTGCAGCACTGTCCCCTACATCTTCTCCCGGACAGCCAGAGTGGAAGAGGACACCCACTAAGCCTCCTTCTGCTCATCCAGTCGAGGAGACTAGAACTCCATTCTGTGATGCCTGTGGAGGAGGAAGTTTTGGACCTTTTGTGAGTGCGATTGGTAAGGCATGGCACCCGCAGCATTTTGTGTGTGATGGATGCGGCGAATCACTGCAGAACCAGGGCTTCATTGAAGAAGGAGGAAAGCTTTACTGTGAAAAGGACTTCAATAAGTACTTTGCTCCTCACTGTGACACTTGCAAGCAGCCCATAAGTGGGCCAAAGAGCCTGCACGCTTGTCCGCCAGCGGTACCACCGCCTTCAAGTGCAATGCTCAAGGCCATACGCGAGGCTTCCGTGAAATCCAAGAATCCCCCAGAAGCCGCTGTAAAATCTCAAAATCAACGTTTGAACAATGCACTGACATTAAAAAATGATCCTCAAGAAGACCACGTCAAACGGGCGAATAGCTTATCTTCAACTTACCCTACCCCAGTGTACGGAGTTAATTACCCCCGGAGAAGTAGCAGCTCTTCTGATACGAATAACAATTGGCCTGCTTCTTCTGGCATTAGTAATGTTACCAGTTTAAAGTCGTTAGAACATCCAATCACTGAACCCGGAGTGGGGTCCATTCGGGATAAGGTTGTCGCCTTGAAGGAGGCCTTGCGCCAAGCCACTGAACGCCAAACTGTAGCAAAACAAGGCATCCCGCCAGCCGTAAAGCGTTTCCAAGAAGCGAAAAAGTTGCTAGCCAAACTCGAGCGAAAGAGATTTATAGCTGAGGATAAGGTTGTTAAACTCGAAGAGCGTATTCGTTATCAGGAAGGAAGGTTGGATAGCAAATACAGAGCTATGTCTGAGAACTGGCAAGTGAATCATAAGATCGAACAACAGAAGAACGAAGACGTAAGAAACATCAGGAACATTGAATACGAACTGACGGAAGTGAAAGCCGCGAAGGAGGCGTCCATGAAGCGCGTTCAAGAAGCCGCGCGCCGAGCTGTCGTTGTCCAATCGGCGCTACAGAACGCGGAAGACCGCAGGCGCGAACTGAGCTCGCGCAGGCGCACACTTCAGGACATGTTGGAAATGTATCACAGGCGAATCAAGGAGCTGAGGAACAAATCGAGAGAGAAGTCAACCCATGTCGAGGACAAGTTCCTGAGGATGAACCTGATGGAAGACTATATAGCAGACAGCAACGACCGGTTTAGAAGGGCGGAAAGGAGGCTACTGCCTTTAAAGATTTACATCAACCAGCTGCATGATTCTCTAGAGCAAGCAAGAAATGAGACCCGACACGCTGGGTATCTTTTAGCAAACTGTCAACAGAGACGTAAAGGACAAAAATACACGTATTATCCATATGATAAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62920	PDZ and LIM domain protein 5 OS=Rattus norvegicus OX=10116 GN=Pdlim5 PE=1 SV=2
Q8CI51	PDZ and LIM domain protein 5 OS=Mus musculus OX=10090 GN=Pdlim5 PE=1 SV=4
Q96HC4	PDZ and LIM domain protein 5 OS=Homo sapiens OX=9606 GN=PDLIM5 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002690 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00261 all species →	Tropomyosin	Tropomyosin	Coiled-coil	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000533 all species →	Family	Tropomyosin	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR050604 all species →	Family	PDZ and LIM domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24214 all species →	PDZ AND LIM DOMAIN PROTEIN ZASP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001725 all species →	Cellular Component	stress fiber	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0030018 all species →	Cellular Component	Z disc	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031941 all species →	Cellular Component	filamentous actin	Interproscan
GO:0051371 all species →	Molecular Function	muscle alpha-actinin binding	Interproscan
GO:0061061 all species →	Biological Process	muscle structure development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.1487.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.