Detailed information of evm.model.Ap4.1506 in Astrangia poculata

Genomic Location: Ap4:15500761...15506550
NR annotation: PFX34124.1, Poly(ADP-ribose) glycohydrolase [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O02776Poly(ADP-ribose) glycohydrolase OS=Bos taurus OX=9913 GN=PARG PE=1 SV=1
Q86W56Poly(ADP-ribose) glycohydrolase OS=Homo sapiens OX=9606 GN=PARG PE=1 SV=1
O88622Poly(ADP-ribose) glycohydrolase OS=Mus musculus OX=10090 GN=Parg PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002028 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20811
all species →		PARG_cat_NPoly (ADP-ribose) glycohydrolase (PARG), helical domainDomainInterproscan
PF05028
all species →		PARG_cat_CPoly (ADP-ribose) glycohydrolase (PARG), Macro domain foldDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048362
all species →		DomainPoly (ADP-ribose) glycohydrolase, helical domainInterproscan
IPR046372
all species →		DomainPoly (ADP-ribose) glycohydrolase (PARG), catalytic domainInterproscan
IPR007724
all species →		FamilyPoly(ADP-ribose) glycohydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12837
all species →		POLY ADP-RIBOSE GLYCOHYDROLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004649
all species →		Molecular Functionpoly(ADP-ribose) glycohydrolase activityInterproscan
GO:0006282
all species →		Biological Processregulation of DNA repairInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005975
all species →		Biological Processcarbohydrate metabolic processInterproscan
GO:0009225
all species →		Biological Processnucleotide-sugar metabolic processInterproscan
GO:1990966
all species →		Biological ProcessATP generation from poly-ADP-D-riboseInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.1506.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap4.1506 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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