Detailed information of evm.model.Ap4.1557 in Astrangia poculata

Genomic Location: Ap4:16121746...16124923
NR annotation: KAJ7376464.1, hypothetical protein OS493_034454 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3UNX5Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Mus musculus OX=10090 GN=Acsm3 PE=1 SV=2
Q6SKG1Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Rattus norvegicus OX=10116 GN=Acsm3 PE=2 SV=1
Q6AYT9Acyl-coenzyme A synthetase ACSM5, mitochondrial OS=Rattus norvegicus OX=10116 GN=Acsm5 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001394 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap4.1557. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR042099
all species →		Homologous_superfamilyANL, N-terminal domainInterproscan
IPR051087
all species →		FamilyMitochondrial Acyl-CoA Synthetase Medium-ChainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43605
all species →		ACYL-COENZYME A SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004321
all species →		Molecular Functionfatty-acyl-CoA synthase activityInterproscan
GO:0005759
all species →		Cellular Componentmitochondrial matrixInterproscan
GO:0006633
all species →		Biological Processfatty acid biosynthetic processInterproscan
GO:0006637
all species →		Biological Processacyl-CoA metabolic processInterproscan
GO:0015645
all species →		Molecular Functionfatty acid ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.1557.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap4.1557 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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