Detailed information of evm.model.Ap4.170 in Astrangia poculata

Genomic Location: Ap4:1748476...1756790
NR annotation: XP_027038049.1, E3 ubiquitin-protein ligase RING2-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4KLY4E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus OX=10116 GN=Rnf2 PE=2 SV=1
Q5R9J5E3 ubiquitin-protein ligase RING2 OS=Pongo abelii OX=9601 GN=RNF2 PE=2 SV=1
Q99496E3 ubiquitin-protein ligase RING2 OS=Homo sapiens OX=9606 GN=RNF2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006742 (this species only)
Ubiquitin familyULD|UFD|RAWUL · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16207
all species →		RAWULRAWUL domain RING finger- and WD40-associated ubiquitin-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043540
all species →		FamilyE3 ubiquitin-protein ligase RING1/RING2Interproscan
IPR032443
all species →		DomainRAWUL domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46076
all species →		E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000151
all species →		Cellular Componentubiquitin ligase complexInterproscan
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0031519
all species →		Cellular ComponentPcG protein complexInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.170.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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