Gene detail

Detailed information of evm.model.Ap4.1806 in Astrangia poculata

Genomic Location: Ap4:18256695...18295430
NR annotation: XP_027040111.1, kinesin-like protein KIF21A [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.1806

atggacgacgaaacgtcagttcgcgtggctttgaggattcgtccgcaaagcgctgccgagcgaattgacatgtgccgtgtttgtacttgcgttacccctggacatcctcaagtcgttcttggcaaagacaaggcctttacgttcgatcatgtatttgatatagaaagcaaacagtttgtgatctatgagcagtgtctcagaggactcgttgacggatgtctcgatggatataacgctacagttctggcttatgggcagacgggatcaggcaagacttataccatggggactggatttgatgtcgccatagcaccagaggaggagggaatcattccacgagcagtcgcacatttattcgagggaatcgacaaaaagaaacatgatgccaaacagagaaatgaacctcagcctgatttcaaagtcacagtacagtttatggagctttacaatgaagaactcattgatctgtttgatttggataataataggggtcggaagagcaatgttaaaattcacgaagatgcaaatggcaatatatataccatgggtgtcacaatgaaggcagtgaactcagcacaagataccttgaattgtttgcaacaaggagctctctcccgcaccactgccagcacaaacatgaatgcacaatcatcaagatctcatgctatattcaccatttatgtcaagcagcagcgagtagtgaagcttactgatgatgatgatgatgagaaacgatcttccgacaacattaataattatgaatatgagatgcttacagccaaattcaactttgtggatcttgctggttctgagagacttaagaggactggtgctacgggcgaccgtgcaaaagagggcatctctatcaactgtggtttgttggcacttgggaatgttatcagcgctcttggtgattcaacaaagaggggaagccatgtaccttacagagattctaaactcaccagattgttacaggattctttaggaggaaacagctgcacactcatgatagcctgtgtgtcaccatctgatcgagacttcatggagaccctgaacacactcaagtatgctaaccgtgccaggaacatcaaaaacaaggtggttgtgaatcaagataaagccagtaaacagatggcttcattgagacttgaaatacagaagctttctctggagctaatggaatttaaacagggaaaacgagtatctggagtggatggagaccaagtcagtgatgtttgccatgagaatgtcatgcttaagactgaaaatgacaaactacgtgtacgtatcaaggctttacagcaaacaattgatacccagtcagtcagaataacagatcttatctcctcccaagtgttggcacaaatgaacggtggtgatgttgatggagaagtagaagatctcatccagaaatatttaaaagaaattgaggagctcaggaacaaactgacggaaagtgaagccatggcaatggccattacacgtcacgcaacactgaagtctcgtatgacgtcacccactacccagaacaccactacctccatactagagatggctaagatggatgtggcaaaacaacgtcaaaaagctcagaaattgaaccatgaggaggaggcaaaggatcagccgtggggtgaacacagcagtgatgagagtagcactgaggaagaagatgaagaaaatgatgaagataattctgaaggaaatgaaggtcaagcagatgatgatgatgatgacgatgatgattcagctgaagacgaaactcttcaagacttgacaggggacctggcagacttatcaacggagatatcaattaaagaaaagctcatagatgaactggagacgagtcagaagaaacttcaaaccctgaaaactcaatacgaggagaagctgtccctgctccacaacaagatcaaggaaacagagacagagagagaccatgttttacaaagcgtcaaaaaccaagactctaagtcggaggagaaggttcgtcaaatacgcggcgaatacgagacgaaaatcagccgtctgcaaggcgagctgaaaaagatgcaagccgccaagaaagaacacgccagactactcaggcaaaaggcgcaaaacgagcaacagttgagaacatttcagggagaactaagcgagttaaagagaacaaaagtccgtcttatgaagcagatgaaagaagaagcggcaaagaataaacagcaagaggcaaaacggaataaagagatcgcgcaactgaagaaagaatctcgtcttaggcagatgaccattaagaatcttgaaatggataaacggcggcgggaggttgtactcaagaggaagcaagaagaggtaaaggccctaagacgtcaacagaaacccgtatcaggtcagctggggacacaacgaaaccaaacaacaatctcaagcgtccgggaagtaaacggcctggaggaaagttcacaatcgtcctattatagcagttcatattcgtcttactcgagctccacagtgtctgtaagcgcttcagcatcaaactcaagattttctggagcagctggtagatcgtctggactgcctgtgaaatcgccgagaagaaagagctccgtagaacaggcctcacggagtgccaaaaagaaatgggatgtcattgataaaaagatcacgtcattgatcatcaaaagacagacgatttcaaatatggaatcggatatggatcgctggatacaggaccgggatcgcctcagtaaacagttagagaagtgtcagatgaaatacgacaatgctaccgtgttacagaaggaggaaggcaatgttcaagaacttaaggagcaactagaagcactgacagctcatgtggattatgttcaggaaaacattactgactgccaaacaagtattatggaaatggaggagcaaggcggagacactgcagagattggagaatttttcgccacctccacgctaacagaagctcgtatccttctggaacactttctgaccaaagtcatatctctgggtcacgaagcgtcttctaaggaagcctcggcgaaagaagttgaagcgagactgaatgccatgaaacagcacaacgaacttcaacaggagctgctacagcatgtgttacagtaccatgactcattcagcagtatagaaaatctggctgcagctgctataggaacggactcagaactcagtggatcagaacttagggatcgattaagaggatccctgaccagcctggattcactaaaggatgaagtcggatcgctttccaggagttccagtggtagcaccgtaaaagattctggcggagaaggacagcagcaaccaccatcaaaacccaaagacaaggctcgtcgccgaactggaacccaggaagagttcttgtacccggacagaatcaaaacgaggcgtgatcctcggctcgacccagtcggggacgaagacgaggctgctgccccagtaccaagcctctctctagtgcccgcacttcccgctcccggagaccccaaggcaacacgtcaaatatcacctgaactaatgcagaagttactggagttagaaaagtcgcgcaaagtacagaacagcgaaaatctgatgccgccccctcctgtctcccaagccagccagaaccaaagtcaggggggccctgtcaagacatcccgctccaactcgctcaacggtaatggtcctgcaccggttcctgcctcgttagtacgtggtaatattaagtccaagtcagcgaggagttttcctgtcagcaagtttggaagttcgggatctggtgtcctgattcagcctaggtcccagcccgcttctcctgctctgcagaggaaatcgctgccggataggcctggggctggggtcgatgatagcgttatacagcagaagacctcagaagacgtctttgctcgcttaacaagcagcctcgctcaggagtccgaccctgatattggtcggatgctccccctccgcccccctgcggggaagccagcgccgttggtttgtacatatgcggctacaggacacaatagtgccgtgctatctcttgatgtaactgaagacctgatgttcactggttctaaagaccgcacagtcaaagtttgggacctgaatacaggcgaagaaacgctttcttgtgctggtcacaagagggacgtggtcgccgtacgatactgtcccaaaacacagcggatcttcggcgcgtcacaaaatgttatcaaggtgtgggacatcagagatggtaaatgcataaggagccttacaccgccagggtcctctttgggttcatttttgtccagcatgacgtcagagactcaaattaacgacttgaaactttccgccgatggttctctgctcttctcagcaatgggtaccacggtcaggatctgggacctagatagctattccatgaccggcaagcttggcggtcacgcagggcctgtcatgacggtattactccggcaaacaaacaaagaatctctggtgtttactgggtcacgtgatcattacgtcaagatattcgaagtcaatggttctaatgttggtgtacagtctgctagaagcaagctagagccgcctcactatgatggcgtacagtcattggctcttaaaggaaagtatctgttcagtggatcacgtgacaacagtatcaagaaatggaacattgaaactcagcaacttatacagcatatgactggagctcataaggactgggtctgcgcattagatttcttacgcccgcaaaacgtgctactcagcggatgtcgtggtggtatgctgaagctctggcgagtggagaatggggcccttgtgtgtgaaatcaaagctcacagacatcccatcaatgctatttgtacaaattcgtcgtgtgtatttacagcatcaagtgaccggttggtacgcttgtggcgggtgactggaacgcttgatgagcaattaaatgaattagatcgctcggtggaagttta

Transcript

evm.model.Ap4.1806

ATGGACGACGAAACGTCAGTTCGCGTGGCTTTGAGGATTCGTCCGCAAAGCGCTGCCGAGCGAATTGACATGTGCCGTGTTTGTACTTGCGTTACCCCTGGACATCCTCAAGTCGTTCTTGGCAAAGACAAGGCCTTTACGTTCGATCATGTATTTGATATAGAAAGCAAACAGTTTGTGATCTATGAGCAGTGTCTCAGAGGACTCGTTGACGGATGTCTCGATGGATATAACGCTACAGTTCTGGCTTATGGGCAGACGGGATCAGGCAAGACTTATACCATGGGGACTGGATTTGATGTCGCCATAGCACCAGAGGAGGAGGGAATCATTCCACGAGCAGTCGCACATTTATTCGAGGGAATCGACAAAAAGAAACATGATGCCAAACAGAGAAATGAACCTCAGCCTGATTTCAAAGTCACAGTACAGTTTATGGAGCTTTACAATGAAGAACTCATTGATCTGTTTGATTTGGATAATAATAGGGGTCGGAAGAGCAATGTTAAAATTCACGAAGATGCAAATGGCAATATATATACCATGGGTGTCACAATGAAGGCAGTGAACTCAGCACAAGATACCTTGAATTGTTTGCAACAAGGAGCTCTCTCCCGCACCACTGCCAGCACAAACATGAATGCACAATCATCAAGATCTCATGCTATATTCACCATTTATGTCAAGCAGCAGCGAGTAGTGAAGCTTACTGATGATGATGATGATGAGAAACGATCTTCCGACAACATTAATAATTATGAATATGAGATGCTTACAGCCAAATTCAACTTTGTGGATCTTGCTGGTTCTGAGAGACTTAAGAGGACTGGTGCTACGGGCGACCGTGCAAAAGAGGGCATCTCTATCAACTGTGGTTTGTTGGCACTTGGGAATGTTATCAGCGCTCTTGGTGATTCAACAAAGAGGGGAAGCCATGTACCTTACAGAGATTCTAAACTCACCAGATTGTTACAGGATTCTTTAGGAGGAAACAGCTGCACACTCATGATAGCCTGTGTGTCACCATCTGATCGAGACTTCATGGAGACCCTGAACACACTCAAGTATGCTAACCGTGCCAGGAACATCAAAAACAAGGTGGTTGTGAATCAAGATAAAGCCAGTAAACAGATGGCTTCATTGAGACTTGAAATACAGAAGCTTTCTCTGGAGCTAATGGAATTTAAACAGGGAAAACGAGTATCTGGAGTGGATGGAGACCAAGTCAGTGATGTTTGCCATGAGAATGTCATGCTTAAGACTGAAAATGACAAACTACGTGTACGTATCAAGGCTTTACAGCAAACAATTGATACCCAGTCAGTCAGAATAACAGATCTTATCTCCTCCCAAGTGTTGGCACAAATGAACGGTGGTGATGTTGATGGAGAAGTAGAAGATCTCATCCAGAAATATTTAAAAGAAATTGAGGAGCTCAGGAACAAACTGACGGAAAGTGAAGCCATGGCAATGGCCATTACACGTCACGCAACACTGAAGTCTCGTATGACGTCACCCACTACCCAGAACACCACTACCTCCATACTAGAGATGGCTAAGATGGATGTGGCAAAACAACGTCAAAAAGCTCAGAAATTGAACCATGAGGAGGAGGCAAAGGATCAGCCGTGGGGTGAACACAGCAGTGATGAGAGTAGCACTGAGGAAGAAGATGAAGAAAATGATGAAGATAATTCTGAAGGAAATGAAGGTCAAGCAGATGATGATGATGATGACGATGATGATTCAGCTGAAGACGAAACTCTTCAAGACTTGACAGGGGACCTGGCAGACTTATCAACGGAGATATCAATTAAAGAAAAGCTCATAGATGAACTGGAGACGAGTCAGAAGAAACTTCAAACCCTGAAAACTCAATACGAGGAGAAGCTGTCCCTGCTCCACAACAAGATCAAGGAAACAGAGACAGAGAGAGACCATGTTTTACAAAGCGTCAAAAACCAAGACTCTAAGTCGGAGGAGAAGGTTCGTCAAATACGCGGCGAATACGAGACGAAAATCAGCCGTCTGCAAGGCGAGCTGAAAAAGATGCAAGCCGCCAAGAAAGAACACGCCAGACTACTCAGGCAAAAGGCGCAAAACGAGCAACAGTTGAGAACATTTCAGGGAGAACTAAGCGAGTTAAAGAGAACAAAAGTCCGTCTTATGAAGCAGATGAAAGAAGAAGCGGCAAAGAATAAACAGCAAGAGGCAAAACGGAATAAAGAGATCGCGCAACTGAAGAAAGAATCTCGTCTTAGGCAGATGACCATTAAGAATCTTGAAATGGATAAACGGCGGCGGGAGGTTGTACTCAAGAGGAAGCAAGAAGAGGTAAAGGCCCTAAGACGTCAACAGAAACCCGTATCAGGTCAGCTGGGGACACAACGAAACCAAACAACAATCTCAAGCGTCCGGGAAGTAAACGGCCTGGAGGAAAGTTCACAATCGTCCTATTATAGCAGTTCATATTCGTCTTACTCGAGCTCCACAGTGTCTGTAAGCGCTTCAGCATCAAACTCAAGATTTTCTGGAGCAGCTGGTAGATCGTCTGGACTGCCTGTGAAATCGCCGAGAAGAAAGAGCTCCGTAGAACAGGCCTCACGGAGTGCCAAAAAGAAATGGGATGTCATTGATAAAAAGATCACGTCATTGATCATCAAAAGACAGACGATTTCAAATATGGAATCGGATATGGATCGCTGGATACAGGACCGGGATCGCCTCAGTAAACAGTTAGAGAAGTGTCAGATGAAATACGACAATGCTACCGTGTTACAGAAGGAGGAAGGCAATGTTCAAGAACTTAAGGAGCAACTAGAAGCACTGACAGCTCATGTGGATTATGTTCAGGAAAACATTACTGACTGCCAAACAAGTATTATGGAAATGGAGGAGCAAGGCGGAGACACTGCAGAGATTGGAGAATTTTTCGCCACCTCCACGCTAACAGAAGCTCGTATCCTTCTGGAACACTTTCTGACCAAAGTCATATCTCTGGGTCACGAAGCGTCTTCTAAGGAAGCCTCGGCGAAAGAAGTTGAAGCGAGACTGAATGCCATGAAACAGCACAACGAACTTCAACAGGAGCTGCTACAGCATGTGTTACAGTACCATGACTCATTCAGCAGTATAGAAAATCTGGCTGCAGCTGCTATAGGAACGGACTCAGAACTCAGTGGATCAGAACTTAGGGATCGATTAAGAGGATCCCTGACCAGCCTGGATTCACTAAAGGATGAAGTCGGATCGCTTTCCAGGAGTTCCAGTGGTAGCACCGTAAAAGATTCTGGCGGAGAAGGACAGCAGCAACCACCATCAAAACCCAAAGACAAGGCTCGTCGCCGAACTGGAACCCAGGAAGAGTTCTTGTACCCGGACAGAATCAAAACGAGGCGTGATCCTCGGCTCGACCCAGTCGGGGACGAAGACGAGGCTGCTGCCCCAGTACCAAGCCTCTCTCTAGTGCCCGCACTTCCCGCTCCCGGAGACCCCAAGGCAACACGTCAAATATCACCTGAACTAATGCAGAAGTTACTGGAGTTAGAAAAGTCGCGCAAAGTACAGAACAGCGAAAATCTGATGCCGCCCCCTCCTGTCTCCCAAGCCAGCCAGAACCAAAGTCAGGGGGGCCCTGTCAAGACATCCCGCTCCAACTCGCTCAACGGTAATGGTCCTGCACCGGTTCCTGCCTCGTTAGTACGTGGTAATATTAAGTCCAAGTCAGCGAGGAGTTTTCCTGTCAGCAAGTTTGGAAGTTCGGGATCTGGTGTCCTGATTCAGCCTAGGTCCCAGCCCGCTTCTCCTGCTCTGCAGAGGAAATCGCTGCCGGATAGGCCTGGGGCTGGGGTCGATGATAGCGTTATACAGCAGAAGACCTCAGAAGACGTCTTTGCTCGCTTAACAAGCAGCCTCGCTCAGGAGTCCGACCCTGATATTGGTCGGATGCTCCCCCTCCGCCCCCCTGCGGGGAAGCCAGCGCCGTTGGTTTGTACATATGCGGCTACAGGACACAATAGTGCCGTGCTATCTCTTGATGTAACTGAAGACCTGATGTTCACTGGTTCTAAAGACCGCACAGTCAAAGTTTGGGACCTGAATACAGGCGAAGAAACGCTTTCTTGTGCTGGTCACAAGAGGGACGTGGTCGCCGTACGATACTGTCCCAAAACACAGCGGATCTTCGGCGCGTCACAAAATGTTATCAAGGTGTGGGACATCAGAGATGGTAAATGCATAAGGAGCCTTACACCGCCAGGGTCCTCTTTGGGTTCATTTTTGTCCAGCATGACGTCAGAGACTCAAATTAACGACTTGAAACTTTCCGCCGATGGTTCTCTGCTCTTCTCAGCAATGGGTACCACGGTCAGGATCTGGGACCTAGATAGCTATTCCATGACCGGCAAGCTTGGCGGTCACGCAGGGCCTGTCATGACGGTATTACTCCGGCAAACAAACAAAGAATCTCTGGTGTTTACTGGGTCACGTGATCATTACGTCAAGATATTCGAAGTCAATGGTTCTAATGTTGGTGTACAGTCTGCTAGAAGCAAGCTAGAGCCGCCTCACTATGATGGCGTACAGTCATTGGCTCTTAAAGGAAAGTATCTGTTCAGTGGATCACGTGACAACAGTATCAAGAAATGGAACATTGAAACTCAGCAACTTATACAGCATATGACTGGAGCTCATAAGGACTGGGTCTGCGCATTAGATTTCTTACGCCCGCAAAACGTGCTACTCAGCGGATGTCGTGGTGGTATGCTGAAGCTCTGGCGAGTGGAGAATGGGGCCCTTGTGTGTGAAATCAAAGCTCACAGACATCCCATCAATGCTATTTGTACAAATTCGTCGTGTGTATTTACAGCATCAAGTGACCGGTTGGTACGCTTGTGGCGGGTGACTGGAACGCTTGATGAGCAATTAAATGAATTAGATCGCTCGGTGGAAGTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z4S6	Kinesin-like protein KIF21A OS=Homo sapiens OX=9606 GN=KIF21A PE=1 SV=2
Q9QXL2	Kinesin-like protein KIF21A OS=Mus musculus OX=10090 GN=Kif21a PE=1 SV=2
O75037	Kinesin-like protein KIF21B OS=Homo sapiens OX=9606 GN=KIF21B PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002474 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47969 all species →	CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005875 all species →	Cellular Component	microtubule associated complex	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0051231 all species →	Biological Process	spindle elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24185	KIF21; kinesin family member 21	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.