Genomic Location: Ap4:2324919...2329335
NR annotation: XP_020627858.1, uncharacterized protein LOC110065102 isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.217 |
| Transcript |
| evm.model.Ap4.217 |
| Protein |
| evm.model.Ap4.217 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000059 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03175 all species → | DNA_pol_B_2 | DNA polymerase type B, organellar and viral | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004868 all species → | Domain | DNA-directed DNA polymerase, family B, mitochondria/virus | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR023211 all species → | Homologous_superfamily | DNA polymerase, palm domain superfamily | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR33568 all species → | DNA POLYMERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003887 all species → | Molecular Function | DNA-directed DNA polymerase activity | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
evm.model.Ap4.217.Transcript abundance of evm.model.Ap4.217 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
