Detailed information of evm.model.Ap4.23 in Astrangia poculata

Genomic Location: Ap4:237054...271827
NR annotation: XP_020613420.1, voltage-dependent R-type calcium channel subunit alpha-1E-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P91645Voltage-dependent calcium channel type A subunit alpha-1 OS=Drosophila melanogaster OX=7227 GN=cac PE=1 SV=3
C9D7C2Voltage-dependent calcium channel type A subunit alpha-1 OS=Apis mellifera OX=7460 GN=CAC PE=2 SV=1
Q01668Voltage-dependent L-type calcium channel subunit alpha-1D OS=Homo sapiens OX=9606 GN=CACNA1D PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000399 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16905
all species →		GPHHVoltage-dependent L-type calcium channel, IQ-associatedFamilyInterproscan
PF00520
all species →		Ion_transIon transport proteinFamilyInterproscan
PF08763
all species →		Ca_chan_IQVoltage gated calcium channel IQ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002077
all species →		FamilyVoltage-dependent calcium channel, alpha-1 subunitInterproscan
IPR031649
all species →		DomainVoltage-dependent L-type calcium channel, IQ-associated domainInterproscan
IPR005821
all species →		DomainIon transport domainInterproscan
IPR027359
all species →		Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan
IPR014873
all species →		DomainVoltage-dependent calcium channel, alpha-1 subunit, IQ domainInterproscan
IPR050599
all species →		FamilyVoltage-dependent calcium channel alpha-1 subunitInterproscan
IPR005446
all species →		FamilyVoltage-dependent calcium channel, L-type, alpha-1 subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45628
all species →		VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005245
all species →		Molecular Functionvoltage-gated calcium channel activityInterproscan
GO:0005891
all species →		Cellular Componentvoltage-gated calcium channel complexInterproscan
GO:0070588
all species →		Biological Processcalcium ion transmembrane transportInterproscan
GO:0005216
all species →		Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811
all species →		Biological Processmonoatomic ion transportInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan
GO:0008331
all species →		Molecular Functionhigh voltage-gated calcium channel activityInterproscan
GO:0098703
all species →		Biological Processcalcium ion import across plasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04851CACNA1D, CAV1.3; voltage-dependent calcium channel L type alpha-1D-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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